Input parameters:

  Query = K10D2.1a (Len=935)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K10D2.1a, Len=935):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGDVYVTSPTFVGHDTGSILAIDCHPSGKKFITCGQKARTSNGLVVVWNAEPVLDKKKASNENVPKLLFQVESQSQSNSC 80  
WD40-rpts             (__________________WD 1__________________)              (________________

Query       81 RWSPDGKRFAFGSDDSSVSVWEYVGLINSMGSITGGAQNVERYKECCVLRGHSMEVLTVEWSPNGKYLASGSIDYRIIIY 160 
WD40-rpts      _WD 2________________)                    (_________________WD 3________________

Query      161 NARKLPDRITVLNDIQLPVKGLSWDPIGKYLASLEGDKKLRFWATDSWQCVKSVTEPFESNIEETMLTRLDWSPDGKYLM 240 
WD40-rpts      )    (_________________WD 4________________)   (______________________WD 5______

Query      241 TPAAVRSGKPLIKLIQRQTWKSDQFLAGHHKGTTCVRAMPRLIEANLKNGKRMQLTCAAVGSRDKSISIWVFPGTLKPLF 320 
WD40-rpts      _______________)   (_______________________WD 6_______________________)   (_____

Query      321 VINNIFNHTVMDFAWCGRNLLACSQDGTVKVIHLSESVIGEMISNEAMSDLCYQIYSIRPPRYELTDKEEDESQDSFNLS 400 
WD40-rpts      ____________WD 7________________)      (_________________WD 8________________)(_

Query      401 DLSSSANNASFVTCPEDVLIKRKKLVAAQQSSDIQLTKSMEDNSKENESKNSEKTMMEERNKQIDVRKDGKRRIQPVFCG 480 
WD40-rpts      _________WD 9__________)                                                        

Query      481 TTTADPMTSLSSEGKKTVAPPPAKRKALAPAVPAKKGEVDLEDSSDSDDDDEEEEEDMEISDIESVRNKKRKVPATTSQP 560 
WD40-rpts                                                                                      

Query      561 MLALDLKKPALRPMEPKSLKTQEGTVLMEAPEQQPKLSQHVVDRKGMFVEIDNRWKHGGVETTQIKLIKKKQQTAENEDD 640 
WD40-rpts                                   (_________________WD10_________________)(__________

Query      641 MMDGERRVNHECLWMAVLGSPVIIVAANKHNVVLGCGDKCLRVYRTFCGTHIVSLRLDSLPVLIGVTEHAAYALTENGRL 720 
WD40-rpts      _______________WD11_________________________)(_________________WD12_____________

Query      721 STWNLKLGKAVVTRQPLFDCVEASTDNSLISADVSETGVPLIVFSNGSIFTFNVSLSCWIQAITTNVLGRLTSPISDAQL 800 
WD40-rpts      ___)                                                                            

Query      801 SCSNGTTNSAGPLVRLLKRMRKQATAPGVAPQVVKAVKESQLEQLLHCAEQLGNPQDYQTMLMLYVETLCEGGSEKKLKN 880 
WD40-rpts                                                                                      

Query      881 ILNDLSRSGAPMQVCGLRRSALYDDVTRMIKLKQPAIAARIVAGVAASTTTKSLF 935 
WD40-rpts                                                             

12 WD40-repeats found in QUERY=K10D2.1a (Len=935):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     8-49       5.42  338.60  0.00170       25.0%     47.13
  WD 2:  Seg  6    64-102      7.77  435.56  8.4e-05       35.0%     50.35
  WD 3:  Seg 10   123-161      7.96  443.35  6.6e-05       37.5%     56.61
  WD 4:  Seg 14   166-204      8.20  453.30  4.8e-05       25.0%     44.53
  WD 5:  Seg 17   208-256      4.72  309.48  0.00420       25.0%     54.20
  WD 6:  Seg 21   260-311      6.20  370.57  0.00063       30.0%     52.99
  WD 7:  Seg 25   315-353      7.06  406.30  0.00021       25.0%     55.24
  WD 8:  Seg 29   360-398      5.23  330.82  0.00217       17.5%     32.81
  WD 9:  Seg 32   399-424      3.14  244.29  0.03132       17.5%     15.77
  WD10:  Seg 38   590-629      6.91  400.24  0.00025       22.5%      3.58
  WD11:  Seg 41   630-685      3.32  251.75  0.02493       15.0%     41.49
  WD12:  Seg 45   686-724      4.29  291.85  0.00724       15.0%     36.04

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-49     ----S----------------PTFV------GHDTGSILAIDCHP-------------SGKKFITCGQKARTSNG----LVVVWN
   WD 2   64-102    -VPKL----------------LFQV------ESQSQ-SNSCRWSP-------------DGKRFAFG-----SDDS----SVSVWE
   WD 3  123-161    -YKEC----------------CVLR------GHSME-VLTVEWSP-------------NGKYLASG-----SIDY----RIIIYN
   WD 4  166-204    -PDRI----------------TVLN------DIQLP-VKGLSWDP-------------IGKYLASL-----EGDK----KLRFWA
   WD 5  208-256    -WQCV----------------KSVTEPFESNIEETM-LTRLDWSP-------------DGKYLMTP-----AAVRSGKPLIKLIQ
   WD 6  260-311    -WKSD----------------QFLA------GHHKG-TTCVRAMPRLIEANLKNGKRMQLTCAAVG-----SRDK----SISIWV
   WD 7  315-353    -TLKP----------------LFVI------NNIFN-HTVMDFAW-------------CGRNLLAC-----SQDG----TVKVIH
   WD 8  360-398    -GEMI----------------SNEA------MSDLC-YQIYSIRP-------------PRYELTDK-----EEDE----SQDSFN
   WD 9  399-424    -------------------------------------LSDLSSSA-------------NNASFVTC-----PEDV----LIKRKK
   WD10  590-629    APEQQ----------------PKLS------QHVVD-RKGMFVEI-------------DNRWKHGG-----VETT----QIKLIK
   WD11  630-685    KKQQTAENEDDMMDGERRVNHECLW------MAVLG-SPVIIVAA-------------NKHNVVLG-----CGDK----CLRVYR
   WD12  686-724    T-FCG----------------THIV------SLRLD-SLPVLIGV-------------TEHAAYAL-----TENG----RLSTWN

   WD40 Template    TGECL----------------RTLS------GHTSG-VTSVSFSP-------------DGKRLVSG-----SEDG----TIKVWD