Input parameters:

  Query = K10B2.1 (Len=665)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K10B2.1, Len=665):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSPHRASTTQQLADLSLTEGEHDEGKPLSIDYLQGHEGLIEEVLKWSEHEQLDFMDKIVHRLSHYQLGKVDNFIRPMLQ 80  
WD40-rpts                                                                                      

Query       81 RDFISNLPAHLVELILFNVNSDSLKSCEEVSTSWRCALARGQHWKKLIEKNVRSDSLWWGLSEKRQWDKFLNISRDMSVR 160 
WD40-rpts                                                                                      

Query      161 RICEKFNYDVNIKRDKLDQLILMHVFYSKLYPKIIRDIHNIDNNWKRGNYKMTRINCQSENSKGVYCLQYDDDKIVSGLR 240 
WD40-rpts                                               (_____________________WD 1_____________

Query      241 DNTIKIWDRKDYSCSRILSGHTGSVLCLQYDNRVIISGSSDATVRVWDVETGECIKTLIHHCEAVLHLRFANGIMVTCSK 320 
WD40-rpts      _______)   (________________WD 2_______________)   (________________WD 3________

Query      321 DRSIAVWDMVSPRDITIRRVLVGHRAAVNVVDFDDRYIVSASGDRTIKVWSMDTLEFVRTLAGHRRGIACLQYRGRLVVS 400 
WD40-rpts      _______)      (________________WD 4_______________)   (________________WD 5_____

Query      401 GSSDNTIRLWDIHSGVCLRVLEGHEELVRCIRFDEKRIVSGAYDGKIKVWDLQAALDPRALSSEICLCSLVQHTGRVFRL 480 
WD40-rpts      __________)   (________________WD 6_______________)            (________________

Query      481 QFDDFQIVSSSHDDTILIWDFLDAPPSGLPSSTNRATLPELPNQAAVARAQMLFEMAARREIERRDREVVEEPALRPRAN 560 
WD40-rpts      WD 7_______________)       (_________________WD 8________________)              

Query      561 AARRHNADIAAAAAAAEAARGAGDNDESSSEEDLDRVDQVNNPNVAGPAPPQPHNQNHRRRQPRPELPVRLMQEMAAFDN 640 
WD40-rpts                                                                                      

Query      641 MRRQQNNMDHLGGGDVDEEMPDGGP 665 
WD40-rpts                               

8 WD40-repeats found in QUERY=K10B2.1 (Len=665):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   202-248      6.35  377.15  0.00051       32.5%     44.67
  WD 2:  Seg  5   252-288      8.87  481.03  2.0e-05       42.5%     51.45
  WD 3:  Seg  9   292-328      8.13  450.46  5.3e-05       37.5%     52.31
  WD 4:  Seg 13   335-371      7.51  424.86  0.00012       42.5%     42.76
  WD 5:  Seg 16   375-411      8.55  467.76  3.1e-05       42.5%     51.66
  WD 6:  Seg 20   415-451      8.98  485.64  1.8e-05       55.0%     52.43
  WD 7:  Seg 24   464-500      7.07  406.71  0.00021       40.0%     46.22
  WD 8:  Seg 27   508-546      6.36  377.53  0.00051       12.5%     14.70

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  202-248    DNNWKRGNYKMTRINCQSENSKGVYC--LQYDDDKIVSGLRDNTIKIWD
   WD 2  252-288    -Y---------SCSRILSGHTGSVLCLQY--DNRVIISGSSDATVRVWD
   WD 3  292-328    -G---------ECIKTLIHHCEAVLHLRFA--NGIMVTCSKDRSIAVWD
   WD 4  335-371    -I---------TIRRVLVGHRAAVNVVDF--DDRYIVSASGDRTIKVWS
   WD 5  375-411    -L---------EFVRTLAGHRRGIACLQY--RGRLVVSGSSDNTIRLWD
   WD 6  415-451    -G---------VCLRVLEGHEELVRCIRF--DEKRIVSGAYDGKIKVWD
   WD 7  464-500    -E---------ICLCSLVQHTGRVFRLQF--DDFQIVSSSHDDTILIWD
   WD 8  508-546    -G---------LPSSTNRATLPELPNQAAVARAQMLFEMAARREIERRD

   WD40 Template    TG---------ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD