Input parameters:

  Query = K08F9.2 (Len=600)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K08F9.2, Len=600):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSEFSQTAVFPSLPRAARGVPVILGSSPAGDKILYCNGNSVFTIPIDSLNSADIYTEHAHQTTVAKISPTGFYCASGDTQ 80  
WD40-rpts              (_________________WD 1_________________)(_________________WD 2__________

Query       81 GNIRIWDTTQSTHILKHTIPVFSGPVKDIAWDSESKRIAAVGEGKERFGHVFLLDTTTSNGSLTGQSRTMNSVDFKPTRP 160 
WD40-rpts      ______)(____________________WD 3____________________)   (_________________WD 4__

Query      161 FRIISGSDDNTVAIFEGPPFKFKHTFDHHKKFVQSTRYNNDGSLFASTGSDGTVVLYNGVDGEKVGVLEDAKGVAHTGSI 240 
WD40-rpts      _______________)   (_________________WD 5________________)   (__________________

Query      241 FALAWSPDQSRIATASADKSVKIWDVSARKLERTIVMGSKIEDQQLGIVWTKSALITVSVSGFLNFLNPDDGSVEKIRQG 320 
WD40-rpts      _WD 6___________________)(___________________WD 7__________________)   (________

Query      321 HNKAITALSKSSDGKFLFSADAEGHITTWEISSGTSSRKSPHTTMITGAQTSSNGDLFTVGWDDQLKITDGSGDTKSFKL 400 
WD40-rpts      _________WD 8________________)(_________________WD 9_________________)          

Query      401 PSQPCGLEVSDDLAIVACYKHVVVLSRGTPTENPIEFHSTCVAFCAEKSLVAVGGKDAKVHVYKLNGDGRLEELKKIEHS 480 
WD40-rpts                 (________________________WD10_______________________)   (____________

Query      481 AEITAVSFSDDGEYLAVTDLARKVIPYSVSTDFSVTSPNSWTFHTSKVLTVAWSPDNQRLATGSIDTSVIIWDMKKPGEH 560 
WD40-rpts      ______WD11_________________)(____________________WD12___________________)(______

Query      561 PVIIKGAHPMSSVNVVRWLDETTVVSAGQDSNIKFWNVPL 600 
WD40-rpts      _____________WD13___________________)   

13 WD40-repeats found in QUERY=K08F9.2 (Len=600):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-48       3.97  278.83  0.01083       17.5%     18.17
  WD 2:  Seg  4    49-87       8.50  465.67  3.3e-05       27.5%     48.58
  WD 3:  Seg  8    88-133      6.14  368.22  0.00068       17.5%     54.18
  WD 4:  Seg 12   137-176      7.95  443.23  6.6e-05       30.0%     55.95
  WD 5:  Seg 16   180-218      8.77  477.06  2.3e-05       25.0%     56.46
  WD 6:  Seg 20   222-265      8.48  464.91  3.4e-05       35.0%     58.38
  WD 7:  Seg 24   266-308      6.31  375.43  0.00054       10.0%     54.86
  WD 8:  Seg 28   312-350      9.39  502.40  1.1e-05       35.0%     56.63
  WD 9:  Seg 32   351-390      6.24  372.54  0.00059       25.0%     55.28
  WD10:  Seg 38   412-464      6.14  368.46  0.00067       17.5%     49.87
  WD11:  Seg 42   468-508      7.11  408.19  0.00020       27.5%     57.19
  WD12:  Seg 46   509-553      9.04  487.93  1.6e-05       37.5%     47.13
  WD13:  Seg 50   554-597      7.10  407.91  0.00020       22.5%     56.29

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-48     VFP-----SL---------------PR-----A--ARGVPVILGSSPAGD-KILYCNGNSVF--TIPIDS
   WD 2   49-87     -LN-----SAD-------------IYT-----E--HAHQTTVAKISPTGF-YCA--SGDTQG--NIRIWD
   WD 3   88-133    TTQ-STHILKH-------------TIP-----V--FSGPVKDIAWDSESK-RIA--AVGEGKERFGHVFL
   WD 4  137-176    -TT-----SNG-------------SLT-----G--QSRTMNSVDFKPTRPFRII--SGSDDN--TVAIFE
   WD 5  180-218    -FK-----FKH-------------TFD-----H--HKKFVQSTRYNNDGS-LFA--STGSDG--TVVLYN
   WD 6  222-265    -GE-----KVG-------------VLEDAKGVA--HTGSIFALAWSPDQS-RIA--TASADK--SVKIWD
   WD 7  266-308    VSA--RKLERT-------------IVM-----G--SKIEDQQLGIVWTKS-ALI--TVSVSG--FLNFLN
   WD 8  312-350    -GS-----VEK-------------IRQ-----G--HNKAITALSKSSDGK-FLF--SADAEG--HITTWE
   WD 9  351-390    ISS----GTSS-------------RKS-----P--HTTMITGAQTSSNGD-LFT--VGW-DD--QLKITD
   WD10  412-464    DLA-----IVACYKHVVVLSRGTPTEN-----P--IEFHSTCVAFCAEKS-LVA--VGGKDA--KVHVYK
   WD11  468-508    -DG-----RLE-------------ELK-----KIEHSAEITAVSFSDDGE-YLA--VTDLAR--KVIPYS
   WD12  509-553    VSTDFSVTSPN-------------SWT-----F--HTSKVLTVAWSPDNQ-RLA--TGSIDT--SVIIWD
   WD13  554-597    MKK-PGEHPVI-------------IKG-----A--HPMSSVNVVRWLDET-TVV--SAGQDS--NIKFWN

   WD40 Template    TGE-----CLR-------------TLS-----G--HTSGVTSVSFSPDGK-RLV--SGSEDG--TIKVWD