Input parameters:

  Query = K07A1.12 (Len=417)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K07A1.12, Len=417):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATLEDGTSEDRVANDEYKIWKKNTPFLYDLVMTHALEWPSLSVQWLPDVAKDNSDHTIHRLILGTHTSDEQNHLLISKI 80  
WD40-rpts                                      (______________WD 1______________) (____________

Query       81 CMPTDDAQFDASRYDTERSEYGGFGAVNGKVEPDIRINHEGEVNRARYMPQKSNIIATKSPHADVYIFDYLKHSAVPRDN 160 
WD40-rpts      ___WD 2______________)               (_____________WD 3_____________)           

Query      161 TFNPLIRLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFKGHESVVEDVAWHVLHDGVFGS 240 
WD40-rpts       (_________________WD 4_________________)(______________________WD 5____________

Query      241 VGDDKKLLIWDVRTSTPGHCIDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMKLHSFESHRDEIFQVQWSPH 320 
WD40-rpts      __________)   (_________________WD 6_________________)(___________________WD 7__

Query      321 NETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVVCSVSEDNILQVWQMADNI 400 
WD40-rpts      _________________)                 (_________________WD 8_________________)     

Query      401 YNEVDEETPADVVERQQ 417 
WD40-rpts                       

8 WD40-repeats found in QUERY=K07A1.12 (Len=417):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    33-66       3.68  266.61  0.01579       15.0%      9.76
  WD 2:  Seg  3    68-102      3.18  246.21  0.02953        7.5%      2.21
  WD 3:  Seg  5   118-149      4.47  299.27  0.00576       12.5%     45.88
  WD 4:  Seg  8   162-201      7.18  411.25  0.00018       32.5%     52.14
  WD 5:  Seg 12   202-251      6.42  380.04  0.00047       22.5%     48.57
  WD 6:  Seg 15   255-294      7.92  441.92  6.9e-05       27.5%     48.99
  WD 7:  Seg 19   295-338      7.40  420.27  0.00013       27.5%     50.78
  WD 8:  Seg 23   356-395      6.52  384.01  0.00042       32.5%     54.44

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-66     MT---------HA---LEW------PSLSVQWLP-DVA-K-D-NSDHTIHRLILGT
   WD 2   68-102    T-----------------SDEQNHLLISKICMPT-DDA-Q-F-DASRYDTERSEYG
   WD 3  118-149    ---------------------NHEGEVNRARYMP-QKS-N-IIATKSPHADVYIFD
   WD 4  162-201    -F---------NP---LIRLKGHTKEGYGLSWNP-NKEGL-I-LSASDDQTVCHWD
   WD 5  202-251    INANQNVAGELQA---KDVFKGHESVVEDVAWHVLHDG-V-F-GSVGDDKKLLIWD
   WD 6  255-294    -S---------TP---GHCIDAHSAEVNCLAFNP-YSEFI-L-ATGSADKTVALWD
   WD 7  295-338    LR---------NLRMKLHSFESHRDEIFQVQWSP-HNE-TIL-ASSGTDKRLHVWD
   WD 8  356-395    -P---------EL---LFIHGGHTAKISDFSWNP-NEPWV-V-CSVSEDNILQVWQ

   WD40 Template    TG---------EC---LRTLSGHTSGVTSVSFSP-DGK-R-L-VSGSEDGTIKVWD