Input parameters:

  Query = K07A1.11 (Len=412)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K07A1.11, Len=412):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSEAESCEETSKEHRIWKKNVPYLYDTVVTKEVEWPSLSVQWMPDVTKTENSDSSMHRMIHGTHTCGGVQNHLMISKFTI 80  
WD40-rpts                                                                                      

Query       81 TTDTPEFDDAKWDSEREEFGGYGEGSAAKWDTEIKINHPGEVHRARYMPHNPFIIASRGPSDDVYIFDYTKHPSEPKDTK 160 
WD40-rpts                                          (_____________WD 1_____________)            

Query      161 FRPQLRLKGHEGEGYGMSWSNTREGHLLTAGDDGMICHWDINANQTISGQIVPQSKFKGHSSNAEDVSFHALHNFVFGSV 240 
WD40-rpts      (_________________WD 2_________________)               (_______________WD 3_____

Query      241 GDDRKLNLWDLRQSKPQLTAVGHTAEVNCITFNPFSEYILATGSVDKTVALWDMRNMRKKMYTLKHHNDEIFQVSFSPHY 320 
WD40-rpts      _________)   (_________________WD 4_________________)    (_________________WD 5_

Query      321 ETVLASSGSDDRVIVWDISKIQDPSSSSAASSDSVPPEVIFIHAGHTGKVADFSWNPNRPWTICSSDEFNALQVWEVSNS 400 
WD40-rpts      ________________)                   (_________________WD 6_________________)    

Query      401 LVSSEKWETEMI 412 
WD40-rpts                  

6 WD40-repeats found in QUERY=K07A1.11 (Len=412):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   117-148      3.58  262.54  0.01789       12.5%     46.26
  WD 2:  Seg  8   161-200      6.00  362.59  0.00081       27.5%     52.53
  WD 3:  Seg 12   216-250      5.93  359.61  0.00089       25.0%     48.56
  WD 4:  Seg 15   254-293      7.65  430.65  9.8e-05       35.0%     51.63
  WD 5:  Seg 19   298-337      7.40  420.31  0.00013       35.0%     54.16
  WD 6:  Seg 23   357-396      5.42  338.51  0.00171       27.5%     54.17

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  117-148    --------NHPGEVHRARYMP-HNPFI-IASRGPSDDVYIFD
   WD 2  161-200    FRPQLRLKGHEGEGYGMSWSN-TREGH-LLTAGDDGMICHWD
   WD 3  216-250    -----KFKGHSSNAEDVSFHALHNF-V-FGSVGDDRKLNLWD
   WD 4  254-293    SKPQLTAVGHTAEVNCITFNP-FSEYI-LATGSVDKTVALWD
   WD 5  298-337    RKKMYTLKHHNDEIFQVSFSP-HYE-TVLASSGSDDRVIVWD
   WD 6  357-396    PEVIFIHAGHTGKVADFSWNP-NRPWT-ICSSDEFNALQVWE

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-DGK-R-LVSGSEDGTIKVWD