Input parameters:

  Query = K06A9.2 (Len=516)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K06A9.2, Len=516):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLHLNELVLDYIGKQLNAKDLLRLSMANKALRGFFDNECYWQKLMFKRWWVDRKFFRYQDDYLFILNNLPDRLQETTNF 80  
WD40-rpts                                                                             (________

Query       81 DRKNVRFVSYSHDGAVMAVFANGCTLWVYREDQDMLNCELHEERGWDKILSVEFSPDDSHLLVTGSRDQFRALTRDHEVL 160 
WD40-rpts      _________WD 1________________)                                                  

Query      161 VFKIGEDSASLRSFIDIDRNMLATWFDNSHFLYMQSGGERDRMRIFMSSVNFSDEIIVYPILSFDTKIVKILVAQHVSPR 240 
WD40-rpts                                                                                      

Query      241 TRRITQIADQAQEEGKTLTQKLIDIGLESGVDVTNMSELRAILDQETQCMPCYRLHSHHDAIPTSRCTCECHHNTDKLLI 320 
WD40-rpts                                                                                      

Query      321 FHGSDERVHVKVITETLLEKAREANRRRGDPEGSPDRNRLYFPLNHCTVFDTVDHVFRTGASLVDSSMCLTPDNKYLYVT 400 
WD40-rpts                                                                                      

Query      401 GTTKRSVDGEIVFEVKPICLDLDTMVLKNQPDFTNIPWVDCDYEVRVTANNDFVAIFSGHDVAIWSSYHRGHIAAALHFD 480 
WD40-rpts                                                       (__________________________WD 2

Query      481 GPVSCVALHPYQNSMCVTNEKLVHFYHSPVMAQEEE 516 
WD40-rpts      __________________________)         

2 WD40-repeats found in QUERY=K06A9.2 (Len=516):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    72-110      7.43  421.52  0.00013       22.5%     39.00
  WD 2:  Seg 19   450-507      3.12  243.67  0.03192       15.0%     32.26

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   72-110    -DRLQETTNFD-------------------RKNVRFVSYSHDGAVMAVFANGCTLWVYR
   WD 2  450-507    NNDFVAIFSGHDVAIWSSYHRGHIAAALHFDGPVSCVALHPYQNSMCV-TNEKLVHFYH

   WD40 Template    TGECLRTLSGH-------------------TSGVTSVSFSPDGKRLVSGSEDGTIKVWD