Input parameters:

  Query = K06A5.8a (Len=874)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K06A5.8a, Len=874):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDNRIPSALTTSVKSPKTPSGIPFLIRERDVIKAILEFLEIRGLHITQLSLEREAGVINGAFSDDLLFLRQLILDGQWDN 80  
WD40-rpts                                                                                      

Query       81 ALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCVKLEPGPLHDNDFAVEELVECLKDLEHICPTPEDYRHLCALLTLPKL 160 
WD40-rpts                                                                                      

Query      161 SDHEDFKNWNPSSARVECFNKVNQLCGHLLPPTGKEKDRGDDANSSNDRLTGLITKGRFYEGCVDYCQAQAIGDKRGIDA 240 
WD40-rpts                                                                                      

Query      241 GPMPSEMLTFRPKLGSADLSLVCWLEMVGKEQFSMPFKQKQLELKVDHIRKPKLEAPWTETIMATPIKPGGQFPHNLVPS 320 
WD40-rpts                                                                                      

Query      321 SKLKFAEKMSQSMTMSMLPPADLTTSMFPSVPRGHPMSQSTAAGFCLGTAITEADAMAQSLLIDEMMESSQLARTSRPDT 400 
WD40-rpts                                                                                      

Query      401 LRGVGMMMTGDTIVPVQPAQVMINAPSQLSSQMMSMSMAPQVMAPIAPMAQNMINYDFAPVRRQLDEMARRSLPPSRLPT 480 
WD40-rpts                                                                                      

Query      481 VPELGSPAVNSHHEENLMTQSRLFQQFSAAKQINEMVLPRGVGGVVGAAGAVGGAHVLPLQSQERLFQQRVAAAPGFQNG 560 
WD40-rpts                                                                              (_______

Query      561 AQIPNQSMVPQGVPMSHQIRPQSIAGLPQAQPQVPQQLQRPVSAPTGMGVQFVPVCRYEDSQAIRATGFHPSGRYFALGT 640 
WD40-rpts      _________________WD 1________________________)        (_______________WD 2______

Query      641 NSKQLHICLYPDTKRTQSRPMAYEQTKNAEIAVTRPKQHRGSVYCLSFNPNGDLLATGSNDKTIRLMAFNEDSCRIGAEM 720 
WD40-rpts      ________)                    (_________________WD 3________________)(___________

Query      721 ELTCHDGTVRDLIFIESSINRSTILVSGGAGNCHLNVTDCNTGQLIQSMKGHTAPILGLYTWSQAGNQFVSCSQDKTIRF 800 
WD40-rpts      ____________WD 4______________________)   (_________________WD 5________________

Query      801 WDLRQQTAVNVISPGSNKSHNASPVTSVCVDPNGKLLVSGHEDASVALFDIGGNRILQTFSFKIVFLNCQTPWR 874 
WD40-rpts      _)          (________________WD 6________________)                        

6 WD40-repeats found in QUERY=K06A5.8a (Len=874):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   553-606      6.08  365.61  0.00074       10.0%     21.47
  WD 2:  Seg  8   615-649      6.77  394.25  0.00030       10.0%     46.59
  WD 3:  Seg 11   670-708      7.85  438.83  7.6e-05       30.0%     42.33
  WD 4:  Seg 14   709-759      5.63  347.37  0.00130       20.0%     44.69
  WD 5:  Seg 18   763-802      9.15  492.57  1.4e-05       35.0%     47.75
  WD 6:  Seg 23   813-850      8.67  472.96  2.6e-05       40.0%     42.75

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  553-606    AAPGFQNGAQIPNQSMV------PQGVPMSHQIRPQSI-AG-----LPQAQPQVPQQLQRPVSAPT
   WD 2  615-649    V-------------------------CRYEDSQAIRAT-GF-----HPSGRYFALGTNSKQLHICL
   WD 3  670-708    -E--------------I------AVTRPKQHRGSVYCL-SF-----NPNGDLLATGSNDKTIRLMA
   WD 4  709-759    FN--------------EDSCRIGAEMELTCHDGTVRDL-IFIESSINRSTILVSGGAGNCHLNVTD
   WD 5  763-802    -G--------------Q------LIQSMKGHTAPILGLYTW-----SQAGNQFVSCSQDKTIRFWD
   WD 6  813-850    SP--------------G--------SNKSHNASPVTSV-CV-----DPNGKLLVSGHEDASVALFD

   WD40 Template    TG--------------E------CLRTLSGHTSGVTSV-SF-----SPDGKRLVSGSEDGTIKVWD