Input parameters:

  Query = K05C4.5 (Len=686)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K05C4.5, Len=686):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSICLEKQKIRCGMISRTARHIAIDENSGKMAIVRKSRSSETHDYIEFYNILSSWLAIPELTVCPENGSIEHLLFVDNGE 80  
WD40-rpts          (_________________WD 1_________________)              (_______________WD 2__

Query       81 LMSSHANGSVCFIDPHNIERIKRIQISASTIWAACKHTENTIAMISHSSVLYFFDVSTKMIISSISLGVESRLFDVSSNG 160 
WD40-rpts      _____________)   (________________WD 3________________)  (_________________WD 4_

Query      161 TIVAIGSIDGVIIAGDGKVQQTLKLDRLNRRDPTIAWSVLFVKPSLLACGDSRGTVTFWNPIDGSLIQSISCLQSHILAM 240 
WD40-rpts      _______________)(___________________WD 5___________________)   (________________

Query      241 VSTDNSTLNIAGVDPRITELRETRNGNYEIVNRRTGPARDVRSMAVYENIIFAAGEDFDVYTCKSGCQKLMFHQQKNLHV 320 
WD40-rpts      WD 6________________)      (________________WD 7_______________)                

Query      321 ASDIVVSAGENYLDVMWKQSGEDEPSEGSVILQQHYEMIHLAKIFTPKKRIITCWAASPYGNLIAIGTCHDVTIYKISPM 400 
WD40-rpts                                            (________________WD 8________________)    

Query      401 VKKINRKVVKTATLDVCATSLSITKNLRFYVAKSDFEVLEFDLETENGKELKSIISQADCGSVSRMVSSPCGNYICVLTT 480 
WD40-rpts          (________________WD 9________________)  (___________________WD10____________

Query      481 RSQIFSINTETGESRLLKVDLPIDMTINSTSAFVLSTITPNDSNNQQDTKKIFHEVNLSNGLIKRSACSNQLRMLPSSPK 560 
WD40-rpts      _______)(_________________WD11_________________)                    (___________

Query      561 SLIPGQPIYLIGIDSNKIMTASYDGHWSILDVESGTVVSAQDGPLKANKKQRENEDTRLLVNGMRLREEVEQNGDGMSPS 640 
WD40-rpts      ________WD12__________________)   (____________________WD13____________________)

Query      641 KRTRRNSFKNEIPPFQSMNSRIVQLEVTGDEIPKTAGFKIKKFGMQ 686 
WD40-rpts                                                    

13 WD40-repeats found in QUERY=K05C4.5 (Len=686):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       5.85  356.20  0.00099        2.5%     32.84
  WD 2:  Seg  6    59-94       5.65  348.07  0.00127       17.5%     52.28
  WD 3:  Seg 10    98-135      5.97  361.47  0.00084       10.0%     53.13
  WD 4:  Seg 14   138-176      5.77  353.00  0.00109       20.0%     48.93
  WD 5:  Seg 18   177-220      5.61  346.48  0.00133       22.5%     43.52
  WD 6:  Seg 22   224-261      6.40  379.21  0.00048       20.0%     53.29
  WD 7:  Seg 26   268-304      5.73  351.47  0.00114       15.0%     47.21
  WD 8:  Seg 35   359-396      5.48  341.08  0.00157       12.5%     54.36
  WD 9:  Seg 39   405-442      5.01  321.56  0.00289       15.0%     54.22
  WD10:  Seg 43   445-488      7.07  406.51  0.00021       17.5%     52.98
  WD11:  Seg 47   489-528      5.33  334.72  0.00192       12.5%     29.55
  WD12:  Seg 52   549-591      5.02  322.14  0.00283       20.0%     45.93
  WD13:  Seg 56   595-640      5.16  327.80  0.00238       17.5%     13.23

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-44     LE-----KQKIRCG----MISR---TARHIAIDENSGKMAIVRKS-------RSSETHD
   WD 2   59-94     --------PELTVC----PENG---SIEHLLFVDNGE-LMSSHAN-------GSVCFID
   WD 3   98-135    -I-----ERIKRIQ----ISAS---TIWAA-CKHTENTIAMISHS-------SVLYFFD
   WD 4  138-176    -T-----KMIISSI----SLGV---ESRLFDVSSNGTIVAIGSID-------GVIIAGD
   WD 5  177-220    GKVQQTLKLDRLNR----RDPT---IAWSVLFVKPSL-LACGDSR-------GTVTFWN
   WD 6  224-261    -G-----SLIQSIS----CLQS---HILAM-VSTDNSTLNIAGVD-------PRITELR
   WD 7  268-304    -Y-----EIVNRRT----GPAR---DVRSMAVYENI--IFAAGED-------FDVYTCK
   WD 8  359-396    -I-----HLAKIFT----PKKR---IITCWAASPYGNLIAIGT-C-------HDVTIYK
   WD 9  405-442    -N-----RKVVKTA----TLDV---CATSLSITKNL-RFYVAKSD-------FEVLEFD
   WD10  445-488    TE-----NGKELKSIISQADCG---SVSRMVSSPCGNYICVLTTR-------SQIFSIN
   WD11  489-528    TE-----TGESRLL----KVDL---PIDMTINSTSAFVLSTITPN-------DSNNQQD
   WD12  549-591    SN-----QLRMLPS----SPKSLIPGQPIYLIGIDSNKIMTASYD-------GHWSILD
   WD13  595-640    -G-----TVVSAQD----GPLK---ANKKQRENEDTRLLVNGMRLREEVEQNGDGMSPS

   WD40 Template    TG-----ECLRTLS----GHTS---GVTSVSFSPDGKRLVSGSED-------GTIKVWD