Input parameters:

  Query = K04G11.4 (Len=395)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K04G11.4, Len=395):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEQRGRASQDEEQAIVGAETGSQPSLPVSPMRPIIAPSPAMVLPTPGHGMGIPQFGPVGLPAQASTPMLSSTPGPSYSSA 80  
WD40-rpts                                                   (______________________WD 1________

Query       81 PTPMPNPSAANLWPTYKLVAEIPNAHKKSISGIKFSPDGRYMGSGSADCSIKIWRMDFVYEKTLMGHRLGINEFSWSSDS 160 
WD40-rpts      _____________)  (_________________WD 2________________)  (_________________WD 3_

Query      161 KLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIASGSFDETIRIWCARNGNTIFSIPGHEDPVSSVCF 240 
WD40-rpts      _______________)   (_________________WD 4________________)   (_________________W

Query      241 NRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVLKEYTGHENSK 320 
WD40-rpts      D 5________________)   (_________________WD 6_________________)   (_____________

Query      321 YCVAANFSVTGGKWIVSGSEDHKVYIWNLQTREILQTLDGHNTAVMCTDCHPGQNIIASAALEPDMRIKIWRSQS 395 
WD40-rpts      _____WD 7__________________)   (__________________WD 8_________________)   

8 WD40-repeats found in QUERY=K04G11.4 (Len=395):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    46-94       6.34  376.42  0.00053       10.0%      5.07
  WD 2:  Seg  6    97-135      9.82  520.18  6.1e-06       32.5%     45.33
  WD 3:  Seg  9   138-176      9.63  512.46  7.7e-06       40.0%     53.93
  WD 4:  Seg 13   180-218     10.65  554.76  2.1e-06       45.0%     56.44
  WD 5:  Seg 17   222-260     10.54  550.04  2.4e-06       42.5%     56.71
  WD 6:  Seg 21   264-303      9.07  489.36  1.6e-05       37.5%     55.21
  WD 7:  Seg 25   307-348      8.25  455.62  4.5e-05       32.5%     57.39
  WD 8:  Seg 29   352-392      8.29  456.98  4.3e-05       32.5%     53.99

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   46-94     PGHGMGIPQFGPVGLPA-QASTPMLSSTPGP---SYSSAPTPMP--NPSAANLWP
   WD 2   97-135    -KLVAE---------IP-NAHKKSISGIKFS---PDGRYMGSGS--ADCSIKIWR
   WD 3  138-176    -FVYEK---------TL-MGHRLGINEFSWS---SDSKLIVSCS--DDKLVKVFD
   WD 4  180-218    -GRCVK---------TL-KGHTNYVFCCCFN---PSGTLIASGS--FDETIRIWC
   WD 5  222-260    -GNTIF---------SI-PGHEDPVSSVCFN---RDGAYLASGS--YDGIVRIWD
   WD 6  264-303    -GTCVK---------TLIDEEHPPITHVKFS---PNGKYILASN--LNNTLKLWD
   WD 7  307-348    -LRVLK---------EY-TGHENSKYCVAANFSVTGGKWIVSGS--EDHKVYIWN
   WD 8  352-392    -REILQ---------TL-DGHNTAVMCTDCH---PGQNIIASAALEPDMRIKIWR

   WD40 Template    TGECLR---------TL-SGHTSGVTSVSFS---PDGKRLVSGS--EDGTIKVWD