Input parameters:

  Query = K03E6.3 (Len=199)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K03E6.3, Len=199):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGKSQSKVQTKKKANKKLTTEEVQTLEQVTYFTKKELKKWYKDFVRDCPSGELKMEEFQGIYKQFFPNGDPSKFAAFVFN 80  
WD40-rpts      (_______________________________________________________________________WD 1____

Query       81 VFDDNHDGHISFSEFIAALSITSRGTLDEKLDWAFSLYDVDKDGFITKDEMADIVDAIYSMIGNMLELPKDEDTPQKRVE 160 
WD40-rpts      __________________________________________________________________)             

Query      161 KIFTNMDRNLDGQLTREEFKEGSKADPWIVQALTMDISS 199 
WD40-rpts                                             

1 WD40-repeats found in QUERY=K03E6.3 (Len=199):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-147      3.06  241.03  0.03460       30.0%     -9.13

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-147    MGKSQSKVQTKKKANKKLTTEEVQTLEQVTYFTKKELKKWYKDFVRDCPSGELKMEEFQGIYKQFFPNGDPSKFAAFVFNVFDDNHDGHISFSEFIAALSITSRGTLDEKLDWAFSLYDVDKDGFITKDEMADIVDAIYSMIGNMLE

   WD40 Template    TGEC----------LRTLS-----------GHT----------------SGVTS----------------VS-----------FSPDGKRL-----------VSGS---------------EDGTIK-----------------VWD