Input parameters:

  Query = K01C8.1 (Len=499)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K01C8.1, Len=499):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVAPSRKKSIIHHHDHSHESTPQKTHHHRVKQAERKRTASISKEDGMEYNKRVRKLHKAFLTHGAESPHVDDKQTSGSNS 80  
WD40-rpts                                                                                      

Query       81 DTEAPLFDPDCDPENPKKLKFSDISSAAFNIKNGVQTTPCVRSLQLSSKCEMDLYFKKEYLQVTGSFKERGARYALSKMA 160 
WD40-rpts                                                                                      

Query      161 EQFKKAGVIAASAGNHALALSYHGQQMGIPVTVVMPVIAPLMKIQFCRSLGATVILKGESIAVAKDFALRHAKENHLKYI 240 
WD40-rpts          (_____________________________________WD 1__________________________________

Query      241 NGYDAIDILAGQGTIGLEILDQVPDVDTILVPVGGGGLIAGIATAVKTLKPDVHIYGIESETCPSFTEAYEAGHIITSQA 320 
WD40-rpts      ___)                                                                            

Query      321 KASLADGLAVPTVGGNSLETAKGLVDKVITVKEESIALSILRLLEVEKAVVEGGGAVGLAAILEGKVPELKGKKVVSILS 400 
WD40-rpts                                                                                      

Query      401 GGNIDTTVLGRSIERGLAVDGRLVRLEVVVSDRPGGIAELTTTIAHLGASIKDIFHERAWISTDVFHVKVKVVAETRGKE 480 
WD40-rpts                                                                                      

Query      481 HVEEIETALKKIYDNVILH 499 
WD40-rpts                         

1 WD40-repeats found in QUERY=K01C8.1 (Len=499):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   165-244      2.87  233.09  0.04405       17.5%     12.88

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  165-244    KAGVIAASAGNHALALSYHGQQMGIPVTVVMPVIAPLMKIQFCRSLGATVILKGESIAVAKDFALRHAKENHLKYINGYD

   WD40 Template    TGECLRTLSGH--------------TSGVTSVSFSP---------DGKRLVSGSED-----------------GTIKVWD