Input parameters:

  Query = JC8.2 (Len=467)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (JC8.2, Len=467):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGVLMVSDLSWIQRGVAKEIPDKIKLDDEKLKELIEGAIPESTDNETELDDDEESDNEKLKGLRGRGDVEMKDEESEFE 80  
WD40-rpts                                                                                      

Query       81 KKYMKGYNENIKDEPEGQDGMKGIAMYSTNKDDPYVTEQVDSDEEEEKDEIMVRKDDNMVAVAKIDKGDFTLECYVYNEA 160 
WD40-rpts                                                                                      

Query      161 DSDWYCHHDYILDAPPLCIEPVQHDPGNEETGKGNLLAVGTMNSEIHIWDLDIMNTATPFLTLGKKERKVKGAARKKRDN 240 
WD40-rpts             (___________________WD 1__________________)            (_________________

Query      241 SAQGHTDAVISLAWNRITTHVLASGGADKTVVLWDLDEAKPAQIIPDQGGEIQTMKWHPNESTFLLLGTMKGQVNVVDCR 320 
WD40-rpts      _______WD 2_______________________)   (_________________WD 3_________________)(_

Query      321 ESSGNASAAWKFDGQIEKVIWNHFNPFTAFCSSDDGRLRHLDMRKPGECLWEGVAHDGPIGGLTLSALTKGLLVTVGEDE 400 
WD40-rpts      __________________WD 4___________________)    (_________________WD 5____________

Query      401 MMNVWKVEDTNGGIEKVHSEKLTIGELHCAQFNPDVAAVLSVGGTAADLIRIIDLTKYEPVVKAFSE 467 
WD40-rpts      _____)(_____________________WD 6_____________________)             

6 WD40-repeats found in QUERY=JC8.2 (Len=467):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   168-210      4.90  316.91  0.00333       22.5%     39.65
  WD 2:  Seg 10   223-275      7.00  403.99  0.00022       32.5%     44.82
  WD 3:  Seg 13   279-318      6.52  383.84  0.00042       15.0%     50.65
  WD 4:  Seg 17   319-362      4.86  315.40  0.00349       15.0%     47.60
  WD 5:  Seg 20   367-406      7.22  412.95  0.00017       32.5%     54.72
  WD 6:  Seg 24   407-454      5.27  332.43  0.00206       20.0%     50.51

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  168-210    HD------------------YILDAPPLCIEPVQHDPGNEETGKG-N-L-LAV--GTMNSEIHIWD
   WD 2  223-275    LGKKERKVKGAARKKR---DNSAQGHTDAVISLAWNR------ITTH-V-LAS--GGADKTVVLWD
   WD 3  279-318    -A------------KP---AQIIPDQGGEIQTMKWHP------NE-S-TFLLL--GTMKGQVNVVD
   WD 4  319-362    CR------------ESSGNASAAWKFDGQIEKVIWNH-----FNP-F-T-AFC--SSDDGRLRHLD
   WD 5  367-406    -G------------EC---LWEGVAHDGPIGGLTLSA------LT-KGL-LVT--VGEDEMMNVWK
   WD 6  407-454    VE------DTNGGIEK---VHSEKLTIGELHCAQFNP------DV-A-A-VLSVGGTAADLIRIID

   WD40 Template    TG------------EC---LRTLSGHTSGVTSVSFSP------DG-K-R-LVS--GSEDGTIKVWD