Input parameters:

  Query = H40L08.3 (Len=1026)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (H40L08.3, Len=1026):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLPASRSESSFVSAARKVSSSATNSKSSAIPIKKDTNRNRKVSAIQPRENSEESDKDDAKDFLKTELAAKLRAFDATC 80  
WD40-rpts                                                                                      

Query       81 KPPKKPLKFSLTISNMTSLPAPSEICSVSGYDRAAFASGKTIIILENGDVKHVDFAEEQPILKSMKLLGRVTALSVSNDF 160 
WD40-rpts                                                                                      

Query      161 SIFAVAIEEENVAKVVVYSLELAIGEEKAVYGTQYLSTEMCISQAAEIIACLSVLEERVHLQTFDVKDGINNCTGNIIAE 240 
WD40-rpts                                                                                      

Query      241 KVPKNWQISFCPADEGVLCALGGGTAYLLRASGGHIENFSTILLPGVTCHDWANDVNIMFGSTTGFLHIYRETISLEVVD 320 
WD40-rpts                                                                                      

Query      321 IRKLSEKILNDSVNIGIISIRSTTRRLACQTGSGIILIFDSNAENGPSWSSCRALIISDFLLKSYHSLSFDFGDENLLYD 400 
WD40-rpts                            (___________________WD 1___________________)              

Query      401 SGNALQRISIQYLSKLNSFDGDVVTVRHCNKVVGLRATDSTIITLDDTGLFVVFSKLTNRVLCSSRVPDAFFFTVLAASH 480 
WD40-rpts                                                                                      

Query      481 KLLVVTKTCVESYTVMLDGLKAAESIFEKELIMDTKQMLFSRDNKFLMFLTKSDNVFCVDLSSKKILWSTDYKLHFFQSM 560 
WD40-rpts                                                                                      

Query      561 GYSNTTLLLLNQKFIVSRIKHGKDLSNVNMHASDIGFSITSELIEGNNNFVFITADCGEVLCSAASALDEPFVVKSKIKK 640 
WD40-rpts                                                                                      

Query      641 LRITAIRAFDDEFLVGYENGSVGVLKLTDKVPDEVQDIILCYFTGVINLKSLLRDINSERNLIKENTEKFLNLFTTRTNN 720 
WD40-rpts                                                                                      

Query      721 ELQQIKTEFDETMKNYKERVKTFERDFNESEAIKQRTISNLKGLYEDESTHQKRKYETMIEDQIRKSFRQLEEKQNEIKT 800 
WD40-rpts                                                                                      

Query      801 IKDDAERKHRDMIGSFHITEKQFSIKAANNQLEIENLKKTIKELKFETLKKHEELGALRDEKEANTQKLKENHREDVELL 880 
WD40-rpts                                                                                      

Query      881 EAEIWALKATCVQLNEQRDHIGDENAKVNSMLRIAKQQIEHTREENQRQEAEIQSLKELVQKLRNKENEITRTYTKVKKN 960 
WD40-rpts                                                                                      

Query      961 YSIQTKQYHEVLQQSHLWKRRMQDLEARIDQLAGCVYDPRRLEHSVLNLLAKSQNVDLDKRYKAPL 1026
WD40-rpts                                                                        

1 WD40-repeats found in QUERY=H40L08.3 (Len=1026):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   343-386      2.96  236.89  0.03924       20.0%      5.15

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  343-386    TTRRLACQTGSGIILIFDSNAENGPSWSSCRALIISDFLLKSYH

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSG----SEDGTIKVWD