Input parameters:

  Query = H37A05.1 (Len=823)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (H37A05.1, Len=823):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDYAYRVFKNVKYFYNSINPATLSGAIDVVVVEQPNGEYKSTPFHVRFGKYGVFSYSDKYVDIAVNGVEIDLKMKLADSG 80  
WD40-rpts                                                                                      

Query       81 VAFFVEEADDQVPDYLLTSPLPEQETPQTAGPAVDKVLAESARKLEETQNENEDVDMNDIAKSRSSSPDGGQGNAREPKQ 160 
WD40-rpts                                                                                      

Query      161 EQSLSQVQRKQTLPFSSSVFSDRRYRSLPDLTVLAAETEVERTDIKKSDGKRTRKTPRPFVHSHSQCSPMEKKHFHKSND 240 
WD40-rpts                                                                                      

Query      241 EILRSLRRETHDMDRRIPLRKKSRVTFNQQATRPIDIKIQQYNDSDSELDSSVNSSPSPSLVDQREADRIADGALSDSEV 320 
WD40-rpts                                                                                      

Query      321 DRQRDRNATPEPHDVTDWKWGELPETREQNKRKKQDEDAEKSTSRWSSWFWRSSTSTADEEQKEKEKLEQEEQGISLDEL 400 
WD40-rpts                                                                                      

Query      401 LNSSSNPVEIEKYLGKPPSVTSIDSGHVSRGVSQPSSPISNHDDYTPTTTPPNDKTPTRESVRFGAGNDIPSSTSATNGV 480 
WD40-rpts                                                                                      

Query      481 RSRASSDEIFPLSEDELDDNFRPQYMQSLRLSSEKLKSLGLVFGANELRFSITTKFQGTTWCSCNIYLYKWYEQIVVSDI 560 
WD40-rpts                                                                                      

Query      561 DGTITKSDVLGHVIPAIGGTWAHTGVAELYTRIKNNGYKMVYLSSRAIGQSHTTKQYLKSVAQDSKQLPDGPVLLSPTSI 640 
WD40-rpts                                         (______________________________________WD 1__

Query      641 ITAFRREVIERRPEEFKIAALTDLKQLFPSGNPFYAGFGNRITDVVSYEAVAVPAARILIIDPSGKVKRSDSSGLALSYK 720 
WD40-rpts      ___________________________________)                                            

Query      721 SMASDTVDYMFPPLSVHVKGDARKTERLTSTWSKPLEHSNFTHWHMTPKDVHDDELLEYEAQRKKLIAEQKAKNSFYFFA 800 
WD40-rpts                                                                                      

Query      801 FHWNYQSLIAQPSQFYMFPLLSI 823 
WD40-rpts                             

1 WD40-repeats found in QUERY=H37A05.1 (Len=823):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   596-676      2.77  229.21  0.04955       22.5%     13.96

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  596-676    NGYKMVYLSSRAIGQSHTTKQYLKSVAQDSKQLPDGPVLLSPTSIITAFRREVIERRPEEFKIAALTDLKQLFPSGNPFYA

   WD40 Template    TGECLRTLSGHTSG------------VTSVSFSPDGKRLVSGS------------ED-----------------GTIKVWD