Input parameters:

  Query = H20J04.4a (Len=488)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (H20J04.4a, Len=488):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKVCDAILSDDDDDLEMDEEQEKPSTSSKSVKNEEFEEFEDGEDVEDEEDEASDEDEEESEGEEGDEFKSSDDTPKPIQ 80  
WD40-rpts                                                                                      

Query       81 ISEDNMTTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYA 160 
WD40-rpts                                                  (___________________________________

Query      161 LILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFV 240 
WD40-rpts      _______WD 1__________________________________________)                          

Query      241 LDEADRMLEGQYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVK 320 
WD40-rpts                                                                                      

Query      321 DAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRG 400 
WD40-rpts                                                                                      

Query      401 LDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVKIQTFRKNIWKTQKS 480 
WD40-rpts                                                                                      

Query      481 TRIFNFCF 488 
WD40-rpts              

1 WD40-repeats found in QUERY=H20J04.4a (Len=488):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   125-214      2.91  234.76  0.04188       12.5%     36.76

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  125-214    EGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVAT

   WD40 Template    TGECLRTLSGHTS-------------------GVTSVSFSPD--------------------GKRLVSGSED-----------GTIKVWD