Input parameters:

  Query = H17B01.4a (Len=946)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (H17B01.4a, Len=946):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLLLLVTIAIFASVTAIFEDQAGKFDWRKQLVGCPAKITFDKVGSKSDRLIVSTAQSVLASLVLNTGNIGWRQIMENPS 80  
WD40-rpts                                                                      (_______________

Query       81 GSTNGLTFTKDREYIYSISEDGRSVRVWNKNNGVLAHQLPISEQKSEIQAIHVTNQRLHVASGRTLVVFRLGDEKPVETV 160 
WD40-rpts      _____WD 1___________________)                                                   

Query      161 ISKTELTFSAFFQQDDVVIHVSALKNAGKSIELSKITEDGAFEPLKTVEIKDFEPKNCHVQEAYLSCSTGSTLQIVDIFR 240 
WD40-rpts                                                                                      

Query      241 QKVQKIQLETEILEISGHGPLILARGAKNAQIVEITAENGAQVRKSVDIGAGEALGITENHESVIVTSSDAVRVVFVNSA 320 
WD40-rpts                                                                                      

Query      321 THFSAKRVKMAENLENSAPKSIFGRKNDKDWEIVIVGEDCHVEFVTVDQNSKSVNLEWSREESLITAVSVEMVDLPLSES 400 
WD40-rpts                                                                                      

Query      401 QQMIEDEFEDGESNIISAFIRRIQVQFGQLCRQITRSIEKVIYVVTSITKNGNGVADFINSVRSASGSGSAASGPFERDY 480 
WD40-rpts                                                                                      

Query      481 FNLRKVIIVATSTGTVFGIDSADGRYLWKLWLGEHFQPLESPFDGEKVPLFVQRTTAHYQLDGLASVVFSNKLTHNGVIV 560 
WD40-rpts                                                                                      

Query      561 SFNPMVGKVVSRNELGYPVKRLSLLPVHTHKHVYPVMLIGKNEEIKIFPSITPEELSATTPYLYLLDIQSQTVQGLKIDI 640 
WD40-rpts                                                                                      

Query      641 SSQKITPVWQGNLGLTAQDDIIAVKGKSFNQKVHSQGRVLVTREVQYKYVNPNLAAIASINRADQHMTITLVDIVTGQIV 720 
WD40-rpts                                                                                      

Query      721 HSASIGKAAKPIHMVHSENWIAYSYWSDKGRRTELGIIELYEGTEEQHTQKEVFDSKIAEKLPPVVAQQSYIYAQGVDAM 800 
WD40-rpts                                                                                      

Query      801 SVSETEQGLTTRSILVAHPSGNIHEVSRRLLDANRPMELTQAMREEMMIGYMPEIAVATEEMINYNQTVHRVRGIKTSPS 880 
WD40-rpts                                                                                      

Query      881 GLESTSLVLAYGTDLFFTRLVPSGTFDILKDDFDHVLISLVLTGLVVGSYVSKRLARSNALASQWS 946 
WD40-rpts                                                                        

1 WD40-repeats found in QUERY=H17B01.4a (Len=946):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    65-109      2.87  233.06  0.04410       22.5%     42.72

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   65-109    LNTGNIGWRQIMENPSGSTNGLTFTKDREYIYSISEDGRSVRVWN

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDG-TIKVWD