Input parameters:

  Query = H04D03.3 (Len=409)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (H04D03.3, Len=409):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSYLAKFTSPNQMKKLIKTVVADLLGSDEDLKTSSCHVISNLAANSQEMLKGYTSQIVPYVLLEKCREVPKEDEIAREKQ 80  
WD40-rpts      (_______________________________________________________________________________

Query       81 EKWNDVWAELVPTTSSAVRLYKEEILNLAIDLVTNNEVWAVRKQAAVMIRVTFENLKKDAGIDVAKKSALSLRDTLNGRI 160 
WD40-rpts      _______WD 1_____________________________________________________________________

Query      161 WDGKIEILRALTSAFEAGGADFKRNMSATEIEDMETVLRREASKKNMEYAGAGLATIATWAVISESVESATWLAKKIDEN 240 
WD40-rpts      ________________)                                                               

Query      241 VTKLIGARNDADSDDNMDGLSNLEKEIRASKLVTLNLTALAISLPAFNNAEEAESTLSQIAGYVKSTVIAWKSKQFFFNE 320 
WD40-rpts                                                                                      

Query      321 LAKSLEKWTPREPVAAGKLIDNILEQADELCAQQKKTVATDALQVVLRIQERSDRFGVDRNSVLDSVNRGVAGSETGLGS 400 
WD40-rpts                                                                                      

Query      401 RFEAKMDTD 409 
WD40-rpts               

1 WD40-repeats found in QUERY=H04D03.3 (Len=409):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-177      2.96  236.85  0.03930       27.5%      1.83

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-177    MSYLAKFTSPNQMKKLIKTVVADLLGSDEDLKTSSCHVISNLAANSQEMLKGYTSQIVPYVLLEKCREVPKEDEIAREKQEKWNDVWAELVPTTSSAVRLYKEEILNLAIDLVTNNEVWAVRKQAAVMIRVTFENLKKDAGIDVAKKSALSLRDTLNGRIWDGKIEILRALTSAFEA

   WD40 Template    TGECLRTLS----------------GHTSGV-------------TS-----------V------SFSPDGKR-----------------LVSGS-------------------------------------------EDGTI----------------KVWD---------------