Input parameters:

  Query = FBpp0293584 (Len=709)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0293584, Len=709):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPSPVRHPAAGGPPPQGPIKFTIADTLERIKEEFNFLQAQYHSIKLECEKLSNEKTEMQRHYVMYYEMSYGLNVEMHKQ 80  
WD40-rpts                                                                                      

Query       81 TEIAKRLNTLINQLLPFLQADHQQQVLQAVERAKQVTMQELNLIIGHQQQHGIQQLLIHAQQVPGGPPQPMGALNPFGAL 160 
WD40-rpts                                                                                      

Query      161 GATMGLPHGPQGLLNKPPEHHRPDIKPTGLEGPAAAEERLRNSVSPADREKYRTRSPLDIENDSKRRKDEKLQESHSPRP 240 
WD40-rpts                                                                                      

Query      241 NGEHVSMEVRDRESLNGERLEKPSSSGIKQERPPSRSGSSSSRSTPSLKTKDMEKPGTPGAKARTPTPNAAAPAPGVNPK 320 
WD40-rpts                                                                                      

Query      321 QMMPQGPPPAGYPGAPYQRPADPYQRPPSDPAYGRPPPMPYDPHAHVRTNGIPHPSALTGGKPAYSFHMNGEGSLQPVPF 400 
WD40-rpts                                                       (__________________WD 1________

Query      401 PPDALVGVGIPRHARQINTLSHGEVVCAVTISNPTKYVYTGGKGCVKVWDISQPGNKNPVSQLDCLQRDNYIRSVKLLPD 480 
WD40-rpts      _________)   (________________WD 2_______________)(_____________________WD 3____

Query      481 GRTLIVGGEASNLSIWDLASPTPRIKAELTSAAPACYALAISPDSKVCFSCCSDGNIAVWDLHNEILVRQFQGHTDGASC 560 
WD40-rpts      ________________)     (_________________WD 4________________)   (_______________

Query      561 IDISPDGSRLWTGGLDNTVRSWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSHVEVLHASKPDKYQLHLHESCV 640 
WD40-rpts      __WD 5________________)     (_______________WD 6_______________)(_______________

Query      641 LSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKETSSVLSCDISTDDKYIVTGSGDKKATVYEVIY 709 
WD40-rpts      ___WD 7_________________)(__________________WD 8_________________)   

8 WD40-repeats found in QUERY=FBpp0293584 (Len=709):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   370-410      2.95  236.64  0.03955       15.0%     24.23
  WD 2:  Seg  5   414-450      6.24  372.34  0.00060       32.5%     50.74
  WD 3:  Seg  9   451-497      7.74  434.47  8.7e-05       25.0%     47.94
  WD 4:  Seg 12   503-541      8.74  475.57  2.4e-05       30.0%     55.52
  WD 5:  Seg 16   545-583     10.29  539.66  3.3e-06       40.0%     52.86
  WD 6:  Seg 20   589-624      6.61  387.69  0.00037       20.0%     46.27
  WD 7:  Seg 23   625-665      8.49  465.43  3.3e-05       30.0%     54.84
  WD 8:  Seg 27   666-706      7.92  441.76  6.9e-05       35.0%     53.96

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  370-410    NGI-------PHPSALTGGKPAYSFHMNGEGSLQPVPFPPDALVGVGI
   WD 2  414-450    -AR-------QINTL-SHGEVVCAVTISNPTK-YVYTGG-KGCVKVWD
   WD 3  451-497    ISQPGNKNPVSQLDCLQRDNYIRSVKLLPDGR-TLIVGGEASNLSIWD
   WD 4  503-541    -PR-------IKAELTSAAPACYALAISPDSK-VCFSCCSDGNIAVWD
   WD 5  545-583    -EI-------LVRQFQGHTDGASCIDISPDGS-RLWTGGLDNTVRSWD
   WD 6  589-624    QLQ-------QH----DFSSQIFSLGYCPTGD-WLAVGMENSHVEVLH
   WD 7  625-665    ASK------PDKYQLHLHESCVLSLRFAACGK-WFVSTGKDNLLNAWR
   WD 8  666-706    TPY------GASIFQSKETSSVLSCDISTDDK-YIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTLSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD