Input parameters:

  Query = FBpp0293562 (Len=2345)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0293562, Len=2345):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEMPDLSHLTPHERMQIENVLMRQKQEEEKQNEIMRRKQDEVVTLEMQIRQRSEQQKKAGVELDATCHICLKTKFADGV 80  
WD40-rpts                                                                                      

Query       81 GHICHYCNIRCCARCGGKVTLRSNKVIWVCILCRKKQELLSKTGQWINKTAAQQDGFIRRIEPDGSSDISQHPIVDPHDT 160 
WD40-rpts                                                                                      

Query      161 TDKRPKLERTRSAAEKENLPMQRAGSMLRRQYSQQEQPTNRRLSASDSGMDPVMSPGQQMQHHQQQQRARMQPMNPQQAQ 240 
WD40-rpts                                                                                      

Query      241 QGYGMQQQQQPRSGGAYPDDDPRYYQGELDGLMRQHPHLAHPSQVQPQHTPQSHSQQQQSQHQQQHLMPQQHRPSPQQHS 320 
WD40-rpts                                                                                      

Query      321 QQQQQQQQHSQQFAARQQQHQQQQHQQQVQQSYHAQIHQQPQQHPHPHSQQQQHHQQMQHQHGQSVPQMGGYQKPPPLTR 400 
WD40-rpts                                                                                      

Query      401 NLTISGGHAMDSSAYSQQQQQQQRRALAGSQYASQQQRSFSSSEEEFQHQLLAAQGAVTVTAGSDYDGGRLQVRTSLDPW 480 
WD40-rpts                                                                                      

Query      481 RQQRSLNERDLLSSGGGGGGGVGGADFRHLSHATQRLYASADQRDRYELQLQHRERLEQYPLTRTARLDVQQRNSLNRSN 560 
WD40-rpts                                                                                      

Query      561 HERQFSGGGAGVGPGGAGGGGAAGAYRRAPPLAAAGGGGSSSSSTTSSSYYPQSKPQIVIGPGSGYDRGSGSMASMASAA 640 
WD40-rpts                                                                                      

Query      641 AATAADAQGQAARNSQRGGLLGATRGGGGSSSVSSTEAAYWDEPATSSSSSAAQDSRRFTERRIKKTVRFDAHDEEASIL 720 
WD40-rpts                                                                                      

Query      721 ASSSLPPVTAILPSTAVDVGAATILSSGKSLDAVGVGGADWSRWEAERQGSQDSATKDSGIDTSSTFTSSEDSNRGDGPK 800 
WD40-rpts                                                                                      

Query      801 LDLNERRSRRDMSPQGRKRVAGMVARDYRTVSGIGQSYHNQASATGYYRRGGGNGVGSAIGPGGMSLSQRSHSAAPSDGY 880 
WD40-rpts                                                                                      

Query      881 HSSGVGGAASGGPAYGYRSTSPRRGSLSPPDDRYIDYPVLPVHGSSPNAPSVYQGPGGVSSAAASASQQQRFQSRSATAT 960 
WD40-rpts                                                                                      

Query      961 PTGSPKKRQLPQVPQTSRSAMLRDRLGQDFDERLASGGRFGRHRTRQPHHQATYRSTGMGGWERHYTGLSDSDLHSMDAR 1040
WD40-rpts                                                                                      

Query     1041 MRPRHSLSPDKDFMGEFGDSDMESVVSVTSSAFSTQSERPRTSRGLSFPRNWRNLFGVRNSFLGGAGGEPITGLRLHHSE 1120
WD40-rpts                                                                                      

Query     1121 PGRANTIEVDDCDYLPVGGAQQLVLLEQLEQLQQLAALAAADSPPISAGIGIQPPHQVLVTDANSGQLVEQFYVEPGTMA 1200
WD40-rpts                                                                                      

Query     1201 EEMMEPLDPHLHPHSVFYSPSPHLPPQPFDIDIDTIYPPRRSNGLKPNVQATAAAYPLPLLPSFEQFKRITTPITNFFRS 1280
WD40-rpts                                                                                      

Query     1281 SSPAGVHPHAHDHTSTTPSSLVGYVRDHQDKSCSHCQNGSQPVVLSTHHTLHLTAAGLAIGACQDPCCLADAHPHPQHQP 1360
WD40-rpts                                                                                      

Query     1361 MGYGEPPSSDPAMCGECVDQHFLGGLTGPQLNLGVVPTYHVHTPTPNAHRRARGQMATPAPPPTQSVLRLSRQLSEDALV 1440
WD40-rpts                                                                                      

Query     1441 AAVPISEAKAQPTSILKKPKLERRRLFHEGQSRSLDYDDLHTKSWGRRRIRYEDEVMPSSGDYPYPHSNPYSSYSPTAAM 1520
WD40-rpts                                                                                      

Query     1521 SRRYGSETNIRQSYMGANVDANHPLSHSHFLVTDDKIVTITYDSDVGWTRRGVAPSLFRGAHRQRGLADPRNHMSLDLQR 1600
WD40-rpts                                                                                      

Query     1601 TSQQKLYGPAAPYLKRRRNLPHPPSAQNAHNFSPMEPGSGMDGLNAAAAGMVEQGNGMGSGGAHNTTSTHNSNHHNSQAS 1680
WD40-rpts                                                       (______________________________

Query     1681 SVSVSQSHNQQLQQQQQLQQQSVRQKGKEGTTAISGSMMASEQLTKSSSGSGGATSAAAAGHLVVGGTNANNASSSSFAN 1760
WD40-rpts      ______WD 1___________________________________)                                  

Query     1761 PQPPPPQQQQQLHGSPNNLNNNNKRAPSSTPQQNTNTINDANNLTLDATQQQSQQQQLQQPPNTCTNQNTNPTTTLTTTT 1840
WD40-rpts                                                                                      

Query     1841 TTSSNATNAATTTTANATNATTTATNPTTTTTNNTNEPNATTTTTTTNANADADADADADAPLDAIDWDAIDAMLDDDFS 1920
WD40-rpts                                                                                      

Query     1921 EYDKDKNGAEEAGGSKSAEGAGAEDKVDGSLSDTANDRKKGGGVDQERSPKGGSGMGKKSNSTSQLSATGRKRRMGFGKK 2000
WD40-rpts                                                                                      

Query     2001 GKNSFTVHRSEEVLPGDITRELRTGGGLGVSLGGAGGAAGGSGGAGGGGLSRGSSSEVDAIEQFFGDGAGGESLKLDTWV 2080
WD40-rpts                                                                                      

Query     2081 QLRLFVVSEQEQYQAQFAIAGSSTSSAGHHHITLPPPHPYHQRQSRGSAGSIQRSVEVPPVPPVTRYSAGSIHSITSSEG 2160
WD40-rpts                                                                                      

Query     2161 SSFSPSLRNDGALNEFVDGLGPGQLVGRQVLGAPSLGDIQLSLCHQKGCLEVEVIRARGLQQKAQSKMLPAPYVKVYLVS 2240
WD40-rpts                                                                                      

Query     2241 GKRCVDKMKTSSARRTLDPLYQQQLVFKQSYTGCILQITVWGDYGRIEKKVFMGVAQIMLDDLNLSNIVIGWYKLFGTTS 2320
WD40-rpts                                                                                      

Query     2321 LVSCPTNIGLGSRRSSIASLDSLKL 2345
WD40-rpts                               

1 WD40-repeats found in QUERY=FBpp0293562 (Len=2345):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15  1650-1726     3.02  239.48  0.03628       27.5%      8.09

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1650-1726   GMVEQGNGMGSGGAHNTTSTHNSNHHNSQASSVSVSQSHNQQLQQQQQLQQQSVRQKGKEGTTAISGSMMASEQLTK

   WD40 Template    TGECLRTLSG---------------HTSGVTSVSFS----------------------PDGKRLVSGSEDGTIKVWD