Input parameters:

  Query = FBpp0293233 (Len=509)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0293233, Len=509):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSIEIESADVIRLIQQYLKESNLMKTLQTLQEETGVSLNTVDSVDGFVQDISNGHWDTVLKVTQSLKLPDKKLLNLYEQI 80  
WD40-rpts                                                                                      

Query       81 VLELIELRELGAARSLLRQTDPMTMLKQQEPERYIHLENMLQRAYFDPREAYAEGSSKEKRRTVIAQELSGEVHVVPSSR 160 
WD40-rpts                                 (_________________WD 1________________)    (_________

Query      161 LLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEEMYPTQLFRQIKFGQKSHVECAQFSPDGQYLITGSVDGFLEV 240 
WD40-rpts      ______________WD 2_______________________)       (______________WD 3____________

Query      241 WNFTTGKVRKDLKYQAQDQFMMMEQAVLALNFSRDSEMVASGAQDGQIKVWRIITGQCLRKFEKAHTKGITCLQFSRDNS 320 
WD40-rpts      _)   (_____________________WD 4____________________)   (_________________WD 5___

Query      321 QVLSASFDYTVRLHGLKSGKMLKEFKGHSSFVNEATFTPDGHSVLSASSDGTVKVWSLKTTECVATYKPLGNELAVNTVL 400 
WD40-rpts      ______________)   (_________________WD 6________________)   (__________________W

Query      401 ILPKNPEHFIVCNRSNTVVIMNMQGQIVRSFSSGKREGGAFISATLSPRGEFIYCAGEDQVLYCFSVSSGKLERTLNVHE 480 
WD40-rpts      D 7__________________)     (_________________WD 8________________)   (__________

Query      481 KDVIGLTHHPHQNLLASYSEDGLLKLWKP 509 
WD40-rpts      _______WD 9________________) 

9 WD40-repeats found in QUERY=FBpp0293233 (Len=509):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   108-146      6.25  372.96  0.00059       10.0%     43.45
  WD 2:  Seg  7   151-202      5.20  329.64  0.00225       15.0%     35.36
  WD 3:  Seg 10   210-242      8.57  468.59  3.0e-05       37.5%     42.95
  WD 4:  Seg 13   246-292      9.41  503.38  1.0e-05       35.0%     54.48
  WD 5:  Seg 17   296-335      8.85  480.25  2.1e-05       37.5%     54.96
  WD 6:  Seg 21   339-377     10.75  558.72  1.8e-06       45.0%     57.00
  WD 7:  Seg 25   381-422      6.22  371.60  0.00061       20.0%     55.80
  WD 8:  Seg 29   428-466      7.40  420.53  0.00013       15.0%     48.65
  WD 9:  Seg 33   470-508      9.66  513.88  7.4e-06       37.5%     51.82

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  108-146    QQEPERY-I--------HLE--------NMLQRAYFDP-REAYA-----EGSSKEKRRTVIA
   WD 2  151-202    GEVHVVP-SSRLLALLGQAL--------KWQQHQGLLP-PGTTIDLFRGKAAMKDQEEEMYP
   WD 3  210-242    ------K-F--------GQK--------SHVECAQFSP-DGQYL-----ITGSVDGFLEVWN
   WD 4  246-292    GKVRKDL-K--------YQAQDQFMMMEQAVLALNFSR-DSEMV-----ASGAQDGQIKVWR
   WD 5  296-335    GQCLRKFEK--------AHT--------KGITCLQFSR-DNSQV-----LSASFDYTVRLHG
   WD 6  339-377    GKMLKEF-K--------GHS--------SFVNEATFTP-DGHSV-----LSASSDGTVKVWS
   WD 7  381-422    TECVATY-K------PLGNE--------LAVNTVLILPKNPEHF-----IVCNRSNTVVIMN
   WD 8  428-466    VRSFSSG-K--------REG--------GAFISATLSP-RGEFI-----YCAGEDQVLYCFS
   WD 9  470-508    GKLERTL-N--------VHE--------KDVIGLTHHP-HQNLL-----ASYSEDGLLKLWK

   WD40 Template    GECLRTL-S--------GHT--------SGVTSVSFSP-DGKRL-----VSGSEDGTIKVWD