Input parameters:

  Query = FBpp0293142 (Len=426)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0293142, Len=426):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSATKIFLRYYPPGLAVNYKTTKGNERLRHFDLLDLDSKTNIEPLADRILLQTLAEAEEEQSPADLEKSPPPRPVSGSVA 80  
WD40-rpts      (____________WD 1____________)                                (_________________

Query       81 RSQNAFSALKQALEKLQKKLREPVKKKFYLHKCHNSHILPLTNVSFDRSGERCLTGSYDRTCHVINTQTAQVEHILSGHD 160 
WD40-rpts      WD 2________________)      (_________________WD 3________________)   (__________

Query      161 NVVFSVGFNFPHCDKIVTGSFDGTAKVWSATSGQSLCTFYGHTAELVAAEFHPVDGKSIATASLDGSARIYDVETSHELQ 240 
WD40-rpts      _______WD 4_________________)   (_________________WD 5_________________)   (____

Query      241 QLTHHGAEVIAARFNRDGQMLLTGSFDHSAAIWDVRSKSGSLIATGSLDNTARIWDTRKLDQELYLAARHSDEVLDVSFD 320 
WD40-rpts      _____________WD 6________________)                             (_______________W

Query      321 AAGQLLATCSSDCTARVWRLEGSSELEMLSLMAGHSDEVSKVCFSPSGCMLLTASADNTARLWLTESGQCSQVLAGHEGE 400 
WD40-rpts      D 7_______________)      (_________________WD 8________________)   (____________

Query      401 VFSCAYSYAGDAILTASKDNSCRFWR 426 
WD40-rpts      _____WD 9________________)

9 WD40-repeats found in QUERY=FBpp0293142 (Len=426):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-30       3.42  255.99  0.02189        7.5%     39.97
  WD 2:  Seg  4    63-101      3.33  252.36  0.02447       12.5%     23.64
  WD 3:  Seg  6   108-146      8.53  467.08  3.2e-05       30.0%     50.55
  WD 4:  Seg 10   150-189      9.21  494.92  1.3e-05       45.0%     52.07
  WD 5:  Seg 14   193-232      9.02  487.32  1.7e-05       37.5%     56.93
  WD 6:  Seg 18   236-274      9.62  512.21  7.8e-06       32.5%     55.68
  WD 7:  Seg 24   304-339      8.65  471.93  2.7e-05       32.5%     48.45
  WD 8:  Seg 27   346-384      9.42  503.72  1.0e-05       37.5%     51.48
  WD 9:  Seg 31   388-426      9.63  512.64  7.7e-06       30.0%     45.45

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-30     ---------MSATKIFLRYY-P-PGLAVNY-----KTTKGNERLRH
   WD 2   63-101    PADLEKSPPPRPVSGSVARS-Q-NA-----FSALKQALEKLQKKLR
   WD 3  108-146    FYLHKCHNSHILPLTNVSFD-R-SGERCLT-----GSYDRTCHVIN
   WD 4  150-189    AQVEHILSGHDNVVFSVGFNFP-HCDKIVT-----GSFDGTAKVWS
   WD 5  193-232    GQSLCTFYGHTAELVAAEFH-PVDGKSIAT-----ASLDGSARIYD
   WD 6  236-274    SHELQQLTHHGAEVIAARFN-R-DGQMLLT-----GSFDHSAAIWD
   WD 7  304-339    ---LYLAARHSDEVLDVSFD-A-AGQLLAT-----CSSDCTARVWR
   WD 8  346-384    LEMLSLMAGHSDEVSKVCFS-P-SGCMLLT-----ASADNTARLWL
   WD 9  388-426    GQCSQVLAGHEGEVFSCAYS-Y-AGDAILT-----ASKDNSCRFWR

   WD40 Template    GECLRTLSGHTSGVTSVSFS-P-DGKRLVS-----GSEDGTIKVWD