Input parameters:

  Query = FBpp0293060 (Len=408)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0293060, Len=408):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAEIKPAQRTNNDRFNTSKKPELLSKLEGSSDDVNAAILIPGENGVISVSDDKTVRVWLKRDSGQYWPSICQYMPSGCT 80  
WD40-rpts                           (_________________WD 1________________)(___________________

Query       81 AIEYVSESRHLYVGQENGTVTQYALSEDCNRLSFLRDYLSHQARVMAVVFSKTHKWILSAGKDKQFAYHCTESGKRVGGY 160 
WD40-rpts      WD 2___________________)       (_________________WD 3________________)   (______

Query      161 NFETPCTALQFDALAKYAFVGDHAGQITMLRCDVQGVQLITTFNGHSAEIRCLKWVEGPQLLFSGACDQSVLVWDVGGKR 240 
WD40-rpts      __________WD 4________________)     (_________________WD 5________________)(____

Query      241 GTIYELQGHSNKVSALSYANHTQQLISCGEDSVVVFWEMNAMRKEVPGWVDTNNCQLCSRPFFWNFRSMMDQKQLGIRQH 320 
WD40-rpts      _______________WD 6__________________)(__________________WD 7_________________) 

Query      321 HCRHCGKAVCDNCSTNRINIPIMGFEFDVRTCDPCYKQLQTVERPSLASFNDAKHSIVYMDLDEDRKRLLTVGQDRLIKI 400 
WD40-rpts       (_________________WD 8________________)   (_________________WD 9_______________

Query      401 WDLSNIWA 408 
WD40-rpts      _)      

9 WD40-repeats found in QUERY=FBpp0293060 (Len=408):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    22-60       9.36  501.29  1.1e-05       30.0%     56.00
  WD 2:  Seg  7    61-104      7.91  441.41  7.0e-05       20.0%     52.67
  WD 3:  Seg 11   112-150      8.27  456.42  4.4e-05       25.0%     55.63
  WD 4:  Seg 15   154-191      6.37  377.84  0.00050       20.0%     55.42
  WD 5:  Seg 19   197-235      9.35  500.87  1.1e-05       25.0%     57.73
  WD 6:  Seg 23   236-278      9.16  493.00  1.4e-05       27.5%     58.69
  WD 7:  Seg 27   279-319      3.79  271.19  0.01371        7.5%     33.78
  WD 8:  Seg 31   322-360      7.29  415.73  0.00016       10.0%     47.97
  WD 9:  Seg 35   364-402      9.26  497.31  1.2e-05       25.0%     55.93

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-60     -P---E----LLSKLEG-SSDDVNAAILIPGENGVISVSDDKTVRVWL
   WD 2   61-104    KR---DSGQYWPSICQY-MPSGCTAIEYVSESRHLYVGQENGTVTQYA
   WD 3  112-150    -L---S----FLRDYLS-HQARVMAVVFSKTHKWILSAGKDKQFAYHC
   WD 4  154-191    -G---K----RVGGYNF-ETP-CTALQFDALAKYAFVGDHAGQITMLR
   WD 5  197-235    -V---Q----LITTFNG-HSAEIRCLKWVEGPQLLFSGACDQSVLVWD
   WD 6  236-278    VGGKRG----TIYELQG-HSNKVSALSYANHTQQLISCGEDSVVVFWE
   WD 7  279-319    MN---A----MRKEVPGWVDTNNCQLCSRPFFWNFRSMMDQKQLGIRQ
   WD 8  322-360    CR---H----CGKAV-C-DNCSTNRINIPIMGFEFDVRTCDPCYKQLQ
   WD 9  364-402    -R---P----SLASFND-AKHSIVYMDLDEDRKRLLTVGQDRLIKIWD

   WD40 Template    TG---E----CLRTLSG-HTSGVTSVSFSPDGKRLVSGSEDGTIKVWD