WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0293022 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0293022 (Len=3535) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0293022, Len=3535): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAGMEVKEKEEQLLLDTLIGLWSQYLQASELEDASVKDHWLWLLLYNLQFLDDKNLQDAWLNSHFNLMPEELCSYLLEQV 80
WD40-rpts
Query 81 YQIISEAKRSQESSPTHEPEQQDKCIKQLRKQHNLAQLILSTPSDCNKILALRTFLTDKLGHHLLTFLLRVDIKLIASQK 160
WD40-rpts
Query 161 SLCHLCINLFPNCKWSASNEQLIPMTSIAQFIGSFYLNSQSKKLRRQQQPKSQLPNHISNPIKSSFEDFRGTTRSSDELA 240
WD40-rpts
Query 241 LLLIQLLTRCVDAEQESQLSVTVHNFALGHLCSSSEQDASGNNDELIKFELLQLIAHCVNNFYVLEQQQPNVHDFNSNFG 320
WD40-rpts
Query 321 QLLYALTANRRSPLLAHGVLYIMFGTLHNLVDNGVRELNQIDVRNFDACFEVLQEAAKSTNFSTAIFLHIYKMLLRLTDN 400
WD40-rpts
Query 401 LSSQEQHLQSLMESSASTAMPKQQQHPRHKRQRSSQLHCLGATSLSCYFQGKLYHLLPSLEAELQEHSVRSLLRTGSCCC 480
WD40-rpts
Query 481 HYNVRNYATCLQLATQLSSSYQKCAYKFLHYNVLHTIFVKRNPQGCPGCEDKLKSPVFHMDLLNIYKDNYKALLNTPAML 560
WD40-rpts
Query 561 LFLKHLKHIAYLLPYDLASGILAEVALPIFRRYKELIESGESKRKISKVTPLQLPSKLENYRALHECLSIFVMYLSDIRL 640
WD40-rpts
Query 641 VKAFYNEENIRYMQDLLIIPELQRGVCDLIKVGIDNIAFLGENSQEQITLSRRLIQLQLNSSDRASQLFQALLYKCSKHS 720
WD40-rpts
Query 721 RAKFWLDESSTPAKLEGHKPADILYITALQWTLNFELLKTSQLFYNEFAKIYSIPVEMLDDEDEDEVETPTSELLPGEKK 800
WD40-rpts
Query 801 LRHGDKNIFDILKLNYNALGCFLMLPKATMGPTTSSTATTPTAGICGSSSLETLVSQLPLAGSTSVSVTTAASSDYADST 880
WD40-rpts
Query 881 LDYASVIGNYDSYSRDMATPSFLQQLLACEPDESTVLFDIRGSQSSKDNPSNSLILPSEEEGATADGIINKLFSIVGSLF 960
WD40-rpts
Query 961 GGSPGSGGSANSPTRANIDADFFCLYEPNGECKKLLLKLFEATMAICIKGFQNEEVEKMQKHLRKLRAIILSHATDNWSE 1040
WD40-rpts
Query 1041 HGEQHARDNAVIQTLQTLLKIAELSSTHQEPTGVVNSPSGDSQQPRPRARSFNSGSVELPRLQTVKLPAKNSLATPPTPR 1120
WD40-rpts
Query 1121 RRPNSSEANAGVDADYFSTRASLSCAADSELELSENEHEFYLTADEGYEADGEIADLSESECELNGGVLAANESTWTPFQ 1200
WD40-rpts
Query 1201 PSSRYRSHIMHQGLSQLVVQMLAELSLLCIKQPNGWTESLTQLANRLFVIRDYLGGPLCLLKGFAPILSCSDPRLRELQQ 1280
WD40-rpts
Query 1281 SILELVTHLNTPEVLQCYYSILASKQPPVDLLMRHMHHISSGSLRKAQPCMELDFPIITDGKIVVTSEPLVSEQIERVRL 1360
WD40-rpts
Query 1361 HHQQCQTNTLFTRAACIFPVTQTRLWQPDGLTLSLWLELRGQQMHRSSMQFNDDETRYSGEDLTKLHLLSLGTNQAMVSI 1440
WD40-rpts
Query 1441 YISNNMQLIFELVKPNEQLAPVRVEEQIEANADTASVISANTQAANGGTIRQALKQTKLALLNSFGQMHLLNGHQASADS 1520
WD40-rpts
Query 1521 TGGYFESSAVQLQHLRLPRHKWMHLVFGLQQQADSVEISIFLDGLEQHTMRLPFRNLRQLTRVHSFQLLALGEGQPTGRS 1600
WD40-rpts
Query 1601 PGSSSSSRSTLDGSTPRYALSNVILFKRRLVDPLLMMNLTAMGPDFTEFTQCQVANWKPNYGFVSLGKLSSSNFGNHLDC 1680
WD40-rpts
Query 1681 MRQLRQARVLVYTAQQPDLVMSYDASQELDMACYGQPHGHMLYGELQQHQAQTLQAATSLSGGLSTLLYLFARIVELTGN 1760
WD40-rpts
Query 1761 ASTQALALDLLLQVAHSDAQLYTEFQRQDYLSLIGYVIKSEKCSKDVQLLRSIVNNACSQVLITRKGDSINVNDNTMATL 1840
WD40-rpts
Query 1841 VYPRLMLTVLQRYSDWHRSGATHSDVLDMLFRCILALTRDKHPQRDFNMEQLQKCGLLGALLNLCKVYVIESPSPVQISP 1920
WD40-rpts
Query 1921 YAAECFVQILAVFSGSPPDSSMLDEIMKLLLLLHKPSDCYVTHDRTHFYFLLTAQQPTKERSLVAANLSRVTTSLRRQLH 2000
WD40-rpts
Query 2001 PQPQELDPERAERIKKLRRLHASTSGYRKAVNEFEEHLDQMADCSNLNKSALRLLSPVEATRWRLKFKRRHPTSANSPKR 2080
WD40-rpts
Query 2081 SPLKIARRRIHPHLHLGKIWQPSGHSTPSSGQSSLPNRKTDFYDQLGIIRLQQRLLILLKDFLCLLPDSSVDVVTRHYVK 2160
WD40-rpts
Query 2161 LELLLVLANQRSCAVRQAIIQLVDVLTKRLPSGELNAATKLMHPLHLANQLTIHGCDVGMFEACLAWINGMHCSLTDIQS 2240
WD40-rpts
Query 2241 CDAPVRIRQRFGLPSLLAIAEGTEPQWVFKALLRLYLQNPDDQTCLIEAGLLQCSVKALYKIYSLRVGQSNADESVVELL 2320
WD40-rpts
Query 2321 ATIGERAMRSVGQINLVWDILNLLSFYQDKQPQLIMRSFRTAQAQLQLEWLTKFFEPNSFRVAVTNDSSLSHSELRTRVE 2400
WD40-rpts
Query 2401 LLIDRCTQFFTVGVGQTTGPNYVASSQELALFQLLVSYGISSNQRCNNFIAWGLQPSRPRDLRSYIVDALWRSQQDEFQR 2480
WD40-rpts
Query 2481 AIICDAKMIKALLWLSLLEDMPEPIENLKPLCDALGIKENDSSWNLVHELDRLDQNRNNMAAKQKTLLEKTVYRFEPLVQ 2560
WD40-rpts
Query 2561 QCVESSMVTTRKVAELQNAERKALMCHMKVYDDTYTYTKWLEIIRRMTHEGAPWHSAERAECSWELDDTEGPSRVHTRLR 2640
WD40-rpts
Query 2641 RCHLDIDRRFFMNEYRPGQGHREDLEPYVRPLDYLIASYDQQLNISLNSQILYNFAAKFLPVDGEIEGEIIITDLKLYFL 2720
WD40-rpts
Query 2721 ATYRCRYFNVNCDIANITEIWLKRYQHQETAFEILLDTNKSLFFSLQNADDWKIMREVFCDKIVATPDQSKVIAITQQWR 2800
WD40-rpts
Query 2801 EGLLTNWEYLMTLNQISGRTYNDLMQYPVFPWVLANYNSEVLDLREGHNFRRLGRPIAVQVEENEKHYISNYTYIDSTNT 2880
WD40-rpts
Query 2881 TMGSLILKPYHYSSHYSNSGTVLHFLVRVPPFTSYFLRYQDNDFDLPDRTFHALNTTWLLASRDSPTDVKELIPEFFCLP 2960
WD40-rpts
Query 2961 EMFENFERFKFGCRQNGERVEDVSLPPWSQRDSRLFVLIHRQALESELVRNQIHNWIDLIFGYKQSGESAVEAINVFHPA 3040
WD40-rpts
Query 3041 TYAVFLDSEISDPIEREAVKTMVKTYGQMPRQLFKSPHPASKPLDYSLVGKPIVSTVRGLRWGVYVGSPQLKAPSWANIH 3120
WD40-rpts
Query 3121 KIPGTEHLVSFCNTNVVYALPGRASVMQGAEPDTYNVISWGYDDRIVRIQPLNKPQAKPKNLLHNGTFDDITACGCDVNS 3200
WD40-rpts (_______________WD 1
Query 3201 NQLWFGHKSGRISVYKCTGGLDSQQRASAKSRQSYARGFSLSYNSAFRKMTNKGIGGGGSERVDEAGNLHPTSSASSVNS 3280
WD40-rpts _______________)
Query 3281 SSISSGGDAFQRDGADLNWLGPTLLVRHTDEITCITLSVEFKIAVTAGRDGIAVIWDLNDWSYVRTIARPAEIHQSPITH 3360
WD40-rpts (____________________WD 2____________________)
Query 3361 VAISPTLGDIVTVHTLPQSCNTSTDPKPTAVATRPNSLNVADECFEVTEENLDDFVNVNVNPNGKSILRLHSVNARYVQH 3440
WD40-rpts (_______
Query 3441 LVHEDRILAVCYSYIKEGVGVNVIATAVEGGFVRFWSSWNLSFVSELTTGTSPIRSICYSTHQHLVVLTRESHIQVWESE 3520
WD40-rpts _____________WD 3___________________)
Query 3521 GLYGNAPKFPQIVYK 3535
WD40-rpts
 3 WD40-repeats found in QUERY=FBpp0293022 (Len=3535): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 49 3181-3216 2.85 232.25 0.04520 17.5% 46.03 WD 2: Seg 57 3292-3337 5.14 326.95 0.00244 27.5% 49.38 WD 3: Seg 67 3433-3477 3.50 259.23 0.01981 15.0% 47.50Multiple sequence alignment of 3 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3181-3216 ----N------LLHNGTFDDITACGCDVNS-----NQLWFGHKSGRISVYK WD 2 3292-3337 RDGADLNWLGPTLLVRHTDEITCITLSVEF-----KIAVTAGRDGIAVIWD WD 3 3433-3477 VNARY------VQHLVHEDRILAVCYSYIKEGVGVNVIATAVEGGFVRFWS WD40 Template TGECL------RTLSGHTSGVTSVSFSPDG-----KRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |