Input parameters:

  Query = FBpp0292775 (Len=1458)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0292775, Len=1458):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIVWGEPQRDVTYPVHATSQATALCWHPEKALLASGWEHGDIHVWFAGHREFASVNAPHKAAIVLLQFSEQGGRMVTADA 80  
WD40-rpts             (_________________WD 1________________)(__________________WD 2___________

Query       81 MGLVTGWRCDGQYQFLTMFSHDLREVLLLICFRLTVESEVREEMANLAKAAVAGDENALDTLTNWRPRTAARSMTHSGVR 160 
WD40-rpts      _______)                                                    (________________WD 

Query      161 DNHCFYACTQGGVVYYINQGGACVEVMKCGSLPPIVQMLWHPRKDAVICLMEDLTVTLFLVESTGILTELDRVKMSGRGG 240 
WD40-rpts      3________________)(__________________WD 4__________________) (__________________

Query      241 GRQGGIAWSGNSLAIITGDFFVRIWDIERSDNYLLKMDLPSGNQPGSSMTTLSNGTMSSSNQFFSHDSSESSGVLRKTPK 320 
WD40-rpts      __WD 5___________________)                         (____________________________

Query      321 YGQLNGEMFTCLAYSSTGQTLCAGTSQGNVYTWKRSGSRLVGAPEDAWQLTNISSVRGAIRSCEWGYNELAKPCMLVNCL 400 
WD40-rpts      _WD 6____________________________)                                              

Query      401 SNVFMLKEQPLLAVHTRELWAVQRSAKSVQLTHCSGREAIVQSEFAVTAMALSELSLVMSNGRSISSYSLQKVEKSLDEF 480 
WD40-rpts                                                                                      

Query      481 EEILQTVEGTTPTTESTTTPLSLKLLQTFAAECLALNLCNQNIFCLGSSDVFVYSVGGVVLHRIQASDIEGKIIGMDLSG 560 
WD40-rpts                                                              (_________________WD 7__

Query      561 CYLSVFTMNGYVKAYDVSRHDPKLLFPSKSGHDIFDDFGEFILVKCNSSGSHLAMVIASSNFTPISTLFCWDFERSNLLE 640 
WD40-rpts      _______________)                                                                

Query      641 YGLLEPETNAKKESSTSLPVRIFWDAEEPRLLATEVKSMIQKTLPQKNSLQPSHFVQSKVVLLFYSEKGCLNVLETQSMS 720 
WD40-rpts                                                                                      

Query      721 PGCQLLNLCVPNVIRLKINTMEEQPLQDFVDLQQCNPVTRKQVLNFSLYVAEGNMDMAYRSIRSIQSKVIWTNLAKMCVH 800 
WD40-rpts                                                                                      

Query      801 TNRLDVAKVCMGHLEQARSVRALRQAIEDDDLETEAKVAVLAIELGMIEEAKDLYRRCKRFDLLNKLLQSIGHLDEAVEL 880 
WD40-rpts                                                                                      

Query      881 AEAEDRIHLKHTYYQKAQELRERGDIKGALEYFEKTQNPAQNITQLLLENPGAMKRYIQTTSDPKLLKWWGQYIESSGDM 960 
WD40-rpts                                                                                      

Query      961 DAALAVYHKAEDWFSQVKILCYLGKISKADAIARQSGDRAACYHLARHYENVGKFQEAIMFFTRAQTFSNAIRICKENDF 1040
WD40-rpts                                                                                      

Query     1041 QEELWTVASSSRQRDKAIAAAYFEECGNFKHAVELYHRAGMLHKALEMAFESQQPEILEIIASDLAPDSDAELINRCADF 1120
WD40-rpts                                                                                      

Query     1121 FCSIEQFQKAVHLLAKTRHLERALGICSEKGVPVTEELSEMLTPEKGEFEEATRVHILVQLGEFLQQQGDYHSATKKFTQ 1200
WD40-rpts                                                                                      

Query     1201 AGDKIRAMKSLLKSGNTDKIIFFANMSRQREVYIMAANYLQALDWQSDPQVLKHIVTFYTKGQAFDSLANFYAICAQIEI 1280
WD40-rpts                                                                                      

Query     1281 EEFQDYGKALTAMQEASKCLEKLSHAQHVYNNLQRTVADVKAILEIQQALREGDHQLVIGSCRSMLIKPELPPIRHAHIL 1360
WD40-rpts                                                                                      

Query     1361 AMLIRALVYVKDYSEAGRALKELTVKDSTWSASGLLDRSIVHKIAQECHLEFDLIWNAGRQVTASTSGTAATGMSSTSGM 1440
WD40-rpts                                                                                      

Query     1441 TTTDDDDADDEEITEELH 1458
WD40-rpts                        

7 WD40-repeats found in QUERY=FBpp0292775 (Len=1458):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     8-46       5.65  347.99  0.00127       30.0%     54.15
  WD 2:  Seg  6    47-88       6.65  389.44  0.00035       25.0%     46.74
  WD 3:  Seg 12   141-178      3.63  264.61  0.01679       10.0%     39.11
  WD 4:  Seg 15   179-220      4.41  296.96  0.00618       15.0%     55.93
  WD 5:  Seg 19   222-266      3.27  249.62  0.02661       20.0%     41.09
  WD 6:  Seg 24   292-354      3.16  245.13  0.03052       17.5%     40.97
  WD 7:  Seg 40   537-576      4.93  318.31  0.00319       17.5%     49.29

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-46     -Q-----------------------RDV--TYPVHATSQATALCWHPEKALLASGWEHGDIHVWF
   WD 2   47-88     AG---------------------HREFA--SVNAPHKAAIVLLQFSEQGGRMVTADAMGLVTGWR
   WD 3  141-178    T-------------------------LT--NWRPRTAARSMTHSGVRDNHCFYACTQGGVVYYIN
   WD 4  179-220    QG-----------------------GACVEVMKCGSLPPIVQMLWHPRKDAVICLMEDLTVTLFL
   WD 5  222-266    ES------------------TGILTELD--RVKMSGRGGGRQGGIAWSGNSLAIITGDFFVRIWD
   WD 6  292-354    LSNGTMSSSNQFFSHDSSESSGVLRKTP--KYGQLNGEMFTCLAYSSTGQTLCAGTSQGNVYTWK
   WD 7  537-576    GG-----------------------VVL--HRIQASDIEGKIIGMDLSGCYLSVFTMNGYVKAYD

   WD40 Template    TG-----------------------ECL--RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD