WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0292404 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0292404 (Len=3426) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0292404, Len=3426): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNCHQILSGACNAGDRCFAIGSVEGIPFTAYAAGCNVVILASTFERVQIIPGANHGYVKISALDCSTDTGKIAAAYENKI 80
WD40-rpts
Query 81 CIFEPTPVIESSKHNTHFLDYRWVQTGSFTSHSNVVTLSWNLEGTRLLTGGTNIQLWKSKSPTHQQEEEHTGVKFEIGES 160
WD40-rpts
Query 161 KEPKQTSNAQSEDVSTWENIWSCQTAIPIYHMAFSPDGTLFATCGRNDRLVKIWYENKQVLFPAKGSSNAGPTPSCRHGV 240
WD40-rpts (______________WD 1______________)
Query 241 DDGTTSSSGGELNFTYVYIAHPRAVSNIVWRKTSKYMPKGSVANMLVTSCLDNICRIWIETVLPDDGMVNMTQFDPMASQ 320
WD40-rpts
Query 321 NPKFRTHRHKHRFMQRLKHMKTCFHIRRHMKAGASAVPGAASAGAASGGGTAGAMGGMGSSPASYTNYLGPIPSLPSSCS 400
WD40-rpts
Query 401 VHDFHSYGFQGSGVTPGMHFHLAASINAETDIPLVPSMQTSDPANQNVFILHWLNNKEMHFTLQAEAILQELTKKVIDEE 480
WD40-rpts
Query 481 NGHGNASSGGVDLPDDAHGSHSQAHAHKKYLRSSKSVSVDDSGEEFSRYSQHTAGTGMGGGGGGAGLHLNSMSNTTSQNS 560
WD40-rpts
Query 561 LNNEPAHPITQLVDSLDNKIECLLRDWHQSPDLLFAIHPVDGSYLIWVIEWLDDYYPGSFRQAQVSFSTRIPSAFPLGDA 640
WD40-rpts
Query 641 MSMSTTVSLFNTGTHPLAFRDIANNVRSKDEFHKGHADDSSLKSDQHSGQTFERHDEEQEDAADDDGDGDREGDADQDEG 720
WD40-rpts
Query 721 GGDRSAAASGGGAAEHSSSSQDSAATGASALPLNVSPSVSMVTKHSNGTLNLWQLTFAFKTKFTQVLSIGHVSRASGHRF 800
WD40-rpts
Query 801 RVNDITCHPVLPLLVSTSHHNLPDSEAKSPMSLFEQPLSGGLPSGGGTGAGPSVGSNGDKDVFTPTGFCSELILWRVDSV 880
WD40-rpts
Query 881 GPLCHSGGVSELARINSPEISAFSNVAWIPTLLPSTTLGSYSNSPSACFVASDGENLRVYQAVIDARTLLAEISCSENLN 960
WD40-rpts
Query 961 TLHKSHSLSSMISNASSTMRAQRSALHDKLKVVSQQSTARPGCILQLDAISDAKHDWQNTQFLHVFQAQLITGGQRTPQA 1040
WD40-rpts
Query 1041 DPHDLEEPRLNALLESDMDAIVDLQRNADFEEPFYIVNIEKTLRGSTIHMWRIVISSKQQSSFLSETAMYVPDSNLTQEP 1120
WD40-rpts
Query 1121 DEDGAGGNPNPRRMSQGAETLTGAEHFGPQVEAPHISITTKKVCTQELPLPEGVDVIHASPAAGHLSSSSIYPACFAPYI 1200
WD40-rpts (_______________WD 2__
Query 1201 IVTACSDSISRFWKCEPIGDEDDPNPEGDAYHWSEWKMFSRIQHSAIEIPGQPLNISAAYSGRIACAYKYGKSFTRPNKG 1280
WD40-rpts _____________)
Query 1281 PDPDSRYVNLCVAIYECESSGGSEWVLEDTIHLKNVHLPRINIGHGIDLSYLHDSRLLAKKQRLNQVLHTFAHDPESRSP 1360
WD40-rpts
Query 1361 RSGETTPELAVNRQPSAAASGLLTVPSFSTLQSLRKSIAENGNTCPLTQKHLVQLDWVSKEDGSHILTVAVGSKILLYTP 1440
WD40-rpts
Query 1441 VSSDIAQANIKAMKESRSVNRPILRKASSLAQPNFVDEIRWMKLRQIDLQTADGLPPLPMQISWVRDGILVVAMDSEMHV 1520
WD40-rpts
Query 1521 YSQWKPHYSSHFAAAAAAAGEDVPDTRNLRDEDLRSLANESTQLRLKNVASMPLISKVSTANLQLLSHDKKRRLGNTSMA 1600
WD40-rpts
Query 1601 NMNGAGGAGGTGTYGGGADDGGNDDYMTDFGLFQASRIACPVLPQYHPKQLMELLNCGKIRWVKAILAHLVRCMSGNSSS 1680
WD40-rpts
Query 1681 TVNQDDDGYARQRSWSRSRTLSISYTADQNIQAEHRGSTTQIPEELMLDYAEINSIPPLPLWVLLNADRETPGQSNNYAE 1760
WD40-rpts
Query 1761 GDKDYDELFDMHNSEDNLDELLSEGDEKKRQERRLSLPEKHSISHFGPRQGQLLSRLLTHTHLPGLSSLDQMHLLALADT 1840
WD40-rpts
Query 1841 VATCNTDFSDKFAADQGKSGGMAGGAGSGAVKDGSTSTDSLDDCGLRFLLAMKHFTYLLRCLPLQQRAQFQRQGVGTSNI 1920
WD40-rpts
Query 1921 VWAFHSESEEELLNLIPSYTKGDLRWATLRDLGVGYWLKNINTLRRCVEKLAKCAYQQKQEPLDAAIYYLAMKKKSLVWG 2000
WD40-rpts
Query 2001 LFRSRRDEKMTAFFGNNFAEDRWRKAALKNAFVLLGKQRFEHAVAFFLLANSLNDAIEVCMNKLEDFQLALIIARLYEGD 2080
WD40-rpts
Query 2081 GEGCYYHHLLHEHILGTDAATGRCDLSRAHPDPFLRSMTYWTIKKYQESLNTLLLNNVGSLHSSYREEDLLRPEQQATNP 2160
WD40-rpts
Query 2161 NVFNFYIYLRTHPLLIRQNIALSAQEKRIAHVVLSGFNYAGDAAPSAVACDKQLQLEDSITPIERQLYFTTAHGHFKSGC 2240
WD40-rpts
Query 2241 PALALEVLNKLPQKISDDSGGSVAGSQAQERAQQNKEELINTGIMDQWGATPAAASNTADAFDWGAPVSSEPEAKFEIKW 2320
WD40-rpts
Query 2321 DDEDEEEDPDLEPDEPELATPQPQAPILGRGKSNGNDTKMDIMAQQLKFVACLKILMEELSTLATGFEVDGGQLRYQLYM 2400
WD40-rpts
Query 2401 WLEREVEALKQLCNYCSQAEQSSHESGDADAEARDKEMNASIYPSTERPTLHEILMQDKQDFEAKVMRAAKRKRWLKANE 2480
WD40-rpts
Query 2481 TLLRTLLSYCSLHGASGGGLASVRMELVLLLQELQQEKTQQQLLSPLPFPTTLPLLSACVAGNKTVIADPIKYLQSQTVD 2560
WD40-rpts
Query 2561 MLQSIIKVLPFPGIEPSALSEIFVLRDLAVALSSCIYQSLCDSESFVVNNSAFNGYPSPGMENIAKINSSFECSYLVGSR 2640
WD40-rpts
Query 2641 NAYGRRRKYSTDEPAGVCTTPSKWPGVTNLRALLAREKDEDVPKLNVLLLESFVSTYMALFIYSLSTCDSRLLYRLSGQS 2720
WD40-rpts
Query 2721 FNNETWSTLFGGGMKKLLIKPAAAPPPTQMVTGGAGAGGASGGTGSTSEEPTDENSVWNTVTSITKQRMKLNMKILGSFS 2800
WD40-rpts
Query 2801 QNSTSSNMKEDKPTYREQFMPPETSMLSYFLTKPPTTECDDYDTDDSHESDNEEEEEDDDDVNVSRSQLKAKDNTEHTNP 2880
WD40-rpts
Query 2881 TSYSWSILRLALIKISTHKIQELVKVAGIELQDLPVISPLSHEVLRTLNRWQDFALSDLIARGPPSRNYIPGCYAESGIN 2960
WD40-rpts
Query 2961 GLAIHKYRSLLNKDNTPFVSGSSAGPIRRLWNYLVRQEPAQEVFIKSIFVKNMEPSTRGSHHTNNDNETDEGQSHSTNEN 3040
WD40-rpts
Query 3041 TDHIRIIHKDHESILSFCLKNNSSSMIAFANPREIQEFDISLLLESPNWYEDECDYDMMNLSKDADTNSSSFLIIQTQEQ 3120
WD40-rpts
Query 3121 NQFGSNSNAYSESNASTQSASQSGRGTSMVLRHKVDNVKRMSAHPLMPLYLTGGQDGSVQIWEWGHQQPVCSPRTSGTFA 3200
WD40-rpts (___________________WD 3__________________)(________________
Query 3201 KVTRCRFSEQGNKFGIGDGDGKLSLWQAGIASQNNRSFISYQCHNKALSDFVFLGSCSLLASAGQSSENKNINIWDTLLP 3280
WD40-rpts ___WD 4___________________)(______________________WD 5_____________________)
Query 3281 HKKSCVSAFTCHDQGSSCLVFAPQHQVLISCGKRGDVCVFDVRQRTLRHRYQAHDSTIKCIALDPHEEFFVTGSIEGDIK 3360
WD40-rpts (_________________WD 6________________) (_________________WD 7______________
Query 3361 IWDMNQFMLINTFPHEHAKNGFFKHTGQGVSQVYVDAFGRLFSCGSDGCMKVRLLVEKDNIVHSVY 3426
WD40-rpts __)
 7 WD40-repeats found in QUERY=FBpp0292404 (Len=3426): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 13 182-215 4.09 283.81 0.00928 22.5% 33.58 WD 2: Seg 40 1179-1214 3.06 241.11 0.03452 15.0% 18.88 WD 3: Seg 76 3141-3183 5.14 327.01 0.00244 22.5% 47.35 WD 4: Seg 80 3184-3227 5.99 362.06 0.00082 32.5% 46.93 WD 5: Seg 83 3228-3276 3.96 278.44 0.01096 25.0% 51.53 WD 6: Seg 87 3283-3321 6.37 377.92 0.00050 25.0% 50.19 WD 7: Seg 91 3325-3363 7.38 419.62 0.00014 27.5% 48.90Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 182-215 SC------Q--------------TAIPIYHMAFSPDGTLFATCG---RNDRLVKIWY WD 2 1179-1214 --------------ASP---AAGHLSSSSIYPACFAPYIIVT-A---CSDSISRFWK WD 3 3141-3183 SQ------S----GRGTSMVLRHKVDNVKRMSAHPLMPLYLT-G---GQDGSVQIWE WD 4 3184-3227 WG------HQQPVCSPR---TSGTFAKVTRCRFSEQGNKFGI-G---DGDGKLSLWQ WD 5 3228-3276 AGIASQNNR----SFIS---YQCHNKALSDFVFLGSCSLLAS-AGQSSENKNINIWD WD 6 3283-3321 -K------S----CVSA---FTCHDQGSSCLVFAPQHQVLIS-C---GKRGDVCVFD WD 7 3325-3363 -R------T----LRHR---YQAHDSTIKCIALDPHEEFFVT-G---SIEGDIKIWD WD40 Template TG------E----CLRT---LSGHTSGVTSVSFSPDGKRLVS-G---SEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |