Input parameters:

  Query = FBpp0292339 (Len=555)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0292339, Len=555):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAAADLVVPTLAIRSSVAVELWSSAGSKQPFEHKPHLPREETKSSRSICFSSNGRYFAYSNGQEVKVLQASRDSAASWP 80  
WD40-rpts                              (____________________WD 1____________________)          

Query       81 VICVLPRPKAFYLQFSPRGSYLCTWEHYAITKDRPEGSPNLLVYEVATGVEVFAIVQKNQADWQPSWSADESIFALVVGG 160 
WD40-rpts           (_________________WD 2_________________)   (________________WD 3___________

Query      161 EALFYDLGEGAEKGFATTSRKIGGSRGGMLSLGPGNCPPFLAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFFQADRV 240 
WD40-rpts      _____)(________________________WD 4_______________________)                 (___

Query      241 EMLWNKRGSGLLLLTSTEVDKSGASYYGNQAVHFMATKGDTCSVPLSKEGPVHCVKWSPKATEFVVVYGFMPSKAALYNL 320 
WD40-rpts      ______________WD 5_________________)  (__________________WD 6_________________)(

Query      321 KCDVVFDFGEGPRNCAYFNPFGNLIALAGFGNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRIS 400 
WD40-rpts      __________________WD 7__________________)(_________________WD 8_________________

Query      401 NGFKVYHYSGALLHETMWPQGQELLGIEWQQFADKTFSEPKITKAKHEGIKSSQPEASKKAYTPPHLRLLKEGKNPEKYL 480 
WD40-rpts      )                                                                               

Query      481 PQPSIPGLAPTAAAGNTTRKFWHRQYDLDNPIMRRGEQGQCQLVGAIGAERPPLSTGSSTSRHNRRYRPYQHKRY 555 
WD40-rpts                                                                                 

8 WD40-repeats found in QUERY=FBpp0292339 (Len=555):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    25-70       3.69  267.20  0.01550       17.5%     41.09
  WD 2:  Seg  7    86-125      3.31  251.37  0.02522        7.5%     24.80
  WD 3:  Seg 10   129-166      3.19  246.51  0.02927       15.0%     47.50
  WD 4:  Seg 14   167-219      3.40  255.18  0.02243       20.0%     30.16
  WD 5:  Seg 19   237-276      3.19  246.40  0.02937       10.0%     40.04
  WD 6:  Seg 23   279-319      3.74  269.19  0.01458       17.5%     50.79
  WD 7:  Seg 27   320-361      4.64  306.32  0.00463       22.5%     44.82
  WD 8:  Seg 31   362-401      4.22  288.89  0.00794       10.0%     44.86

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-70     SAG--------SKQPFEHKPHLPREETKSSRSICFSSNGRYF--A-----YSN-GQEVKVLQ
   WD 2   86-125    PRP--------KAFYLQ-------FSPRGSYLCTWEHYAITK--D-----RPEGSPNLLVYE
   WD 3  129-166    -GV--------EVFAIV-------QKNQADWQPSWSADESIF--A-----LVV-GGEALFYD
   WD 4  167-219    LGEGAEKGFATTSRKIG-------GSRGGMLSLGPGNCPPFL--AFYTPGAKGAPSMCKLYK
   WD 5  237-276    ADR--------VEMLWN-------KRGSGLLLLTSTEVDKSG--A-----SYYGNQAVHFMA
   WD 6  279-319    -GD--------TCSVPL-------SKEGPVHCVKWSPKATEFVVV-----YGFMPSKAALYN
   WD 7  320-361    -LK--------CDVVFD-------FGEGPRNCAYFNPFGNLI--A--LAGFGNLPGAVEVWD
   WD 8  362-401    VSK--------REKLAN-------LKCADTTVFEWHPNGEWF--V-----TATTAPRLRISN

   WD40 Template    TGE--------CLRTLS-------GHTSGVTSVSFSPDGKRL--V-----SGSEDGTIKVWD