Input parameters:

  Query = FBpp0292219 (Len=1082)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0292219, Len=1082):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDFRNVYKAMRIRWSHDEDFTSSAGYDADDGERRIINLNGPQPTKYGNNRITTAKYSFISFLPAFLFEQFRRYSNCFFLL 80  
WD40-rpts                                                                                      

Query       81 IAILQQIPEVSPTGRYTTLVPLMFILSVSAIKEIIEDIKRHRADNEINHRSIERLDSGSWCTVRWSELTVGDIIKVGINT 160 
WD40-rpts                                                                                      

Query      161 FFPADLILLSSSEPQAMCFIETANLDGETNLKIRQALPATAELLETKDLQRLEGRIECELPNRHLYEFNGVLRETGKPPA 240 
WD40-rpts                                                                                      

Query      241 ALGNDQVLQRGAILRNTAWVFGIVVYSGQETKLMKNSTSAPLKRSTVDKLTNTQILMLFMILISLCIISGLCNLFWTREH 320 
WD40-rpts                                                                                      

Query      321 SETDWYLGLTDFKTKSLGYNLLTFFILYNNLIPISLQVTLELVRFLQAIFINYDIEMYHEESNTPAMARTSNLNEELGMV 400 
WD40-rpts                                                                                      

Query      401 KYIFSDKTGTLTQNVMEFKKCSIAGYVYTAERTPEESQLVQNILGRHETSAVIEEFLELLSVCHTVIPERKENGNMIYHA 480 
WD40-rpts                                                                                      

Query      481 ASPDERALVEGAQKFGYIFDTRTPKYVEINALGVRKRYEVLNVLEFTSSRKRMSLIVRTPENKIKLFCKGADTVIYERLA 560 
WD40-rpts                                                                (_____________________

Query      561 PQGQAFREQTLRHLEEFASDGLRTLCLAVADIRPDVYQEWSQTFDKASVALQNRESKLEDAANLIENNLRLLGATAIEDR 640 
WD40-rpts      ______________________________________WD 1______________________________________

Query      641 LQDGVPETIASLLDAGIYIWVLTGDKQETAINIGYSCRLISHSMDIIILNEESLDATREVIHRHYGEFKSSSAKDANVAL 720 
WD40-rpts      ____________________)                                                           

Query      721 VIDGTTLKYALSCDLRNDFQDLCILCRVVICCRVSPMQKAEVVEMVTQSTNAVTLAIGDGANDVAMIQKANVGIGISGVE 800 
WD40-rpts                                                                                      

Query      801 GLQAACASDYSIAQFRYLQRLLLVHGAWNYARISKLILYSFYKNVCLYVIELWFAVYSGWSGQILFERWTIGLYNVLFTA 880 
WD40-rpts                                                                                      

Query      881 MPPFAMGLFEKFCTAETMIRYPMLYKTSQNAKLFNVKVFWIWIFNALLHSVFLFWLPLAAYTKEVIWSDGKTSDYLLMGN 960 
WD40-rpts                                                                                      

Query      961 LVYTYVIVTVCLKAGLITNSWTWLTHLAIWGSIVLWFGFLLIYSHVWPMFKFASNFRGMDIQLLSTPVFYFCLMLVPITT 1040
WD40-rpts                                                                                      

Query     1041 LLIDVICKLVHNTVFKTLTEAVRETEIRRSDISEVMNEPRSS 1082
WD40-rpts                                                

1 WD40-repeats found in QUERY=FBpp0292219 (Len=1082):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 22   539-661      2.92  235.27  0.04124       22.5%     26.09

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  539-661    TPENKIKLFCKGADTVIYERLAPQGQAFREQTLRHLEEFASDGLRTLCLAVADIRPDVYQEWSQTFDKASVALQNRESKLEDAANLIENNLRLLGATAIEDRLQDGVPETIASLLDAGIYIWV

   WD40 Template    TGECLRTLSGHTSG-----------------------------VTSVSFSPDGKR------------------------------------LVSGS-------EDG-----------TIKVWD