Input parameters:

  Query = FBpp0292078 (Len=728)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0292078, Len=728):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPSPVRHPAAGGPPPQGPIKFTIADTLERIKEEFNFLQAQYHSIKLECEKLSNEKTEMQRHYVMYYEMSYGLNVEMHKQ 80  
WD40-rpts                                                                                      

Query       81 TEIAKRLNTLINQLLPFLQADHQQQVLQAVERAKQVTMQELNLIIGHQQQHGIQQLLIHAQQVPGGPPQPMGALNPFGAL 160 
WD40-rpts                                                                                      

Query      161 GATMGLPHGPQGLLNKPPEHHRPDIKPTGLEGPAAAEERLRNSVSPADREKYRTRSPLDIENDSKRRKDEKLQEDEGEKS 240 
WD40-rpts                                                                         (____________

Query      241 DQDLVVDVANEMESHSPRPNGEHVSMEVRDRESLNGERLEKPSSSGIKQERPPSRSGSSSSRSTPSLKTKDMEKPGTPGA 320 
WD40-rpts      __________WD 1______________________)                                           

Query      321 KARTPTPNAAAPAPGVNPKQMMPQGPPPAGYPGAPYQRPADPYQRPPSDPAYGRPPPMPYDPHAHVRTNGIPHPSALTGG 400 
WD40-rpts                                                                          (___________

Query      401 KPAYSFHMNGEGSLQPVPFPPDALVGVGIPRHARQINTLSHGEVVCAVTISNPTKYVYTGGKGCVKVWDISQPGNKNPVS 480 
WD40-rpts      _______WD 2_________________)   (________________WD 3_______________)(__________

Query      481 QLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSAAPACYALAISPDSKVCFSCCSDGNIAVWD 560 
WD40-rpts      ___________WD 4____________________)     (_________________WD 5________________)

Query      561 LHNEILVRQFQGHTDGASCIDISPDGSRLWTGGLDNTVRSWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSHVE 640 
WD40-rpts         (_________________WD 6________________)(__________________WD 7_______________

Query      641 VLHASKPDKYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKETSSVLSCDISTDDKYIVTGSGDKK 720 
WD40-rpts      __)(__________________WD 8_________________)  (_________________WD 9____________

Query      721 ATVYEVIY 728 
WD40-rpts      ____)   

9 WD40-repeats found in QUERY=FBpp0292078 (Len=728):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   228-277      4.98  320.20  0.00301       17.5%     -4.86
  WD 2:  Seg  4   389-429      3.16  245.40  0.03028       15.0%     23.84
  WD 3:  Seg  7   433-469      6.20  370.89  0.00062       32.5%     48.20
  WD 4:  Seg 11   470-516      7.72  433.55  8.9e-05       25.0%     48.44
  WD 5:  Seg 14   522-560      8.66  472.43  2.7e-05       30.0%     54.76
  WD 6:  Seg 18   564-602     10.22  537.01  3.6e-06       40.0%     52.84
  WD 7:  Seg 22   603-643      6.97  402.53  0.00023       22.5%     52.40
  WD 8:  Seg 26   644-684      8.46  464.09  3.5e-05       30.0%     54.80
  WD 9:  Seg 30   687-725      7.88  440.09  7.3e-05       32.5%     53.12

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  228-277    KDE-------KLQEDEGEKSDQDLVV-DVANEMESHSPRPNGE-HVSMEVRDRESLNGE
   WD 2  389-429    NGI-------PHP----------SAL-TGGKPAYSFHMNGEGSLQPVPFPPDALVGVGI
   WD 3  433-469    -AR-------QIN----------TL--SHGEVVCAVTISNPTK-YVYTGG-KGCVKVWD
   WD 4  470-516    ISQPGNKNPVSQL----------DCL-QRDNYIRSVKLLPDGR-TLIVGGEASNLSIWD
   WD 5  522-560    -PR-------IKA----------ELT-SAAPACYALAISPDSK-VCFSCCSDGNIAVWD
   WD 6  564-602    -EI-------LVR----------QFQ-GHTDGASCIDISPDGS-RLWTGGLDNTVRSWD
   WD 7  603-643    LRE-------GRQ----------LQQHDFSSQIFSLGYCPTGD-WLAVGMENSHVEVLH
   WD 8  644-684    ASK------PDKY----------QLH-LHESCVLSLRFAACGK-WFVSTGKDNLLNAWR
   WD 9  687-725    -YG-------ASI----------FQS-KETSSVLSCDISTDDK-YIVTGSGDKKATVYE

   WD40 Template    TGE-------CLR----------TLS-GHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD