Input parameters:

  Query = FBpp0291745 (Len=1432)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0291745, Len=1432):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHLHFERNINTKCDCTILSLSWMGKVPDDIPEDEGWKLNRTNYYQEGWLATGNVRGIVGVTFTTSHCRKNMDYPLRTNYN 80  
WD40-rpts                              (________________WD 1________________) (________________

Query       81 LRGHRSDVILVKWNEPYQKLASCDSSGIIFVWIKYEGRWSIELINDRNTPVTHFSWSHDGRMALICYQDGFVLVGSVAGQ 160 
WD40-rpts      ______WD 2______________________)(___________________WD 3__________________)   (

Query      161 RYWSSMLNLESTITCGIWTPDDQQVYFGTTQGQVIVMDVHGAMVSQVQLSNDVPITSMAWSCEKFKMEEGEEAEPGVTNA 240 
WD40-rpts      _________________WD 4________________)   (_________________WD 5________________)

Query      241 AKRSFVLAVSFQNGYIYLLKSFDDVSPAHINTCLNGALGMVMEWSNSRELLAVAGTLRTGVDGTKTEDMGTPSCYTNLVK 320 
WD40-rpts      (_____________WD 6____________)                                                 

Query      321 FYTETGTCLYQAHIPCSSATVSAITWGHNDKRLFIATGTQVHIAWVSRRVASLQLLCRLEIQASVGSESLLPLLPLPSRI 400 
WD40-rpts           (__________________WD 7_________________)                 (______________WD

Query      401 KSLIGNLFAQTIRCCVPDLKSLRDFVSRPPLCSTRLHCTMIRHDDDSNLSSGTCYTLYLEYLGGLVPLLKGKRTSKIRPE 480 
WD40-rpts       8_____________)                                                                

Query      481 FVIFDPQVNDSPLYFQYSAEAKSSSGSSQSTTTGNSGRTDSSDSDFEERSRFGSPRTPRKKRVRPKRRHQAGDRLSASGG 560 
WD40-rpts                                                                                      

Query      561 GVSNDPDSLDELAYVDTLPEEVKLVEVTSNIWGTKFKIHGLAKTVPANLGQVTYKTSLLHLQPRQMTLVITELRDDFPPG 640 
WD40-rpts                                                                                      

Query      641 PDPSFNPNIFSEDEDEHHQHQGIHHDAVPQVNVITAQDGASLKPPIIPQRRLTDGASAPLIAPMSPRPNRILARHKNSLT 720 
WD40-rpts                                                                                      

Query      721 VNGERGSGSSAGLSPLARAESYDDDSSNESQEAGAAGSQSTTVLLHQAPSNGSGPGPSCSKSITRPKTISSFKNSYSRSS 800 
WD40-rpts                                                                                      

Query      801 SNSSCQSRHAISPLYCDGAVPTLQSPKNAVAPSDIIFERPAVPAAGQTTLMSYSSNADYANNVVQVKNALMSEPVRSANS 880 
WD40-rpts                                                                                      

Query      881 HVNPVPLNLNLNLERMDARVKCTAPTTSSTAKRREMLYIDEETQSPTPTPSSSSMKRTPTVVSIAPALPDSITRSCSVGY 960 
WD40-rpts                                                                                      

Query      961 LDSVAITPSDEALSALRKDAPNKRLILVDKKRNRRKRQQQEDARRHKLQQTGKSKSLDSCDLLSLQTKLSSKEHEQVVRK 1040
WD40-rpts                                                                                      

Query     1041 LQEISDSSACSSAANTLCFKCRNNMSPSSACKRCQPSASSVLDEITAVVPAVEPAKESPAVQAKPAPKKRFDVITSFTDS 1120
WD40-rpts                                                                                      

Query     1121 PLFTRKHRFGIGRSKETAGTENSTPLLGRKQDNGFSFVKQLSEVRWRRKEQPAQAQVNGSSNASTLERQPQPEITGAACG 1200
WD40-rpts                                                                                      

Query     1201 TVEATPVEAKASVSLHTQALTTLENIISRLRDLDEGRLTPPSTPQRLPRSSPASPAASKKNKRQQSNSPIRHILNSPLLN 1280
WD40-rpts                                                                                      

Query     1281 RRQRKKQSIIESSDDEGNQTNGSGEESNNAGNGKQYRDLETFQKAQLRQKLKRGKIEPNGSASCANPAPVRREFVMHNKA 1360
WD40-rpts                                                                                      

Query     1361 PMWNEMSQVYQLDFGGRVTQESAKNFQIEFRGKQVMQFGRIDGNAYTLDFQYPFSALQAFAVALANVTQRLK 1432
WD40-rpts                                                                              

8 WD40-repeats found in QUERY=FBpp0291745 (Len=1432):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    25-62       3.37  253.95  0.02330       12.5%     31.79
  WD 2:  Seg  6    64-113      7.59  428.19  0.00011       35.0%     43.59
  WD 3:  Seg  9   114-156      6.23  372.00  0.00060       25.0%     55.63
  WD 4:  Seg 13   160-198      6.68  390.51  0.00034       20.0%     53.12
  WD 5:  Seg 17   202-240      4.39  296.10  0.00635       12.5%     28.71
  WD 6:  Seg 19   241-271      3.21  247.45  0.02843       17.5%     34.91
  WD 7:  Seg 25   326-366      4.12  284.89  0.00898       20.0%     54.02
  WD 8:  Seg 29   384-416      2.78  229.45  0.04919       15.0%     -4.35

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-62     -KV---PDD----------IPE--DEGWKLNRTNYYQEG-WLATGNVRGIVGVTF
   WD 2   64-113    TSH---CRKNMDYPLRTNYNLR--GHRSDVILVKWNEPYQKLASCDSSGIIFVWI
   WD 3  114-156    KYEGRWSIE----------LIN--DRNTPVTHFSWSHDGRMALICYQDGFVLVGS
   WD 4  160-198    -QR---YWS----------SML--NLESTITCGIWTPDDQQVYFGTTQGQVIVMD
   WD 5  202-240    -AM---VSQ----------VQL--SNDVPITSMAWSCEKFKMEEGEEAEPGVTNA
   WD 6  241-271    ------------------------AKRSFVLAVSFQNGYIYLLKSFDDVSPAHIN
   WD 7  326-366    -GT---CLY----------QAHIPCSSATVSAITWGHNDKRLFIATGTQVHIAWV
   WD 8  384-416    --------------------SV--GSESLLPLLPLPSRIKSLIGNLFAQTIRCCV

   WD40 Template    TGE---CLR----------TLS--GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD