Input parameters:
Query = FBpp0291687 (Len=265)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0291687, Len=265):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 VPESEKTHVCMPKLRLEFIFLRKELFMTRAKRAVRNQAEPLLVSSYKGHLKAINSIAFINLPKIIFTGSHDYSCRLWTQG 80
WD40-rpts (___________________WD 1__________________)
Query 81 GRYLGTLGTVLPWSRLTPFERAGDDNHLYRMPPDIKKVASSTTLKVISGIQAETSIKISNGKTVEDREEETAQTEDVTEL 160
WD40-rpts
Query 161 RKLLDKPVKEPIVGKHFELPGRSILDQHIELDTTQSYIAVFTQLKVHSTEMLERLPTPAVVSRVQTENYMDHYIPVEGKV 240
WD40-rpts
Query 241 DVSGSAINIKQPSRRRFLIKQGDTA 265
WD40-rpts
1 WD40-repeats found in QUERY=FBpp0291687 (Len=265):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 36-78 7.00 403.64 0.00023 22.5% 44.00
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 36-78 NQAEPLLVSSYKGHLKAINSIAFINLPKIIFTGSHDYSCRLWT
WD40 Template TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD