WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0290992 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0290992 (Len=2332) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0290992, Len=2332): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MESTKNKKYSRSFPDTDGDDIVISGMAGKFPNCRNITEYQYKLYNKIDMVDDDERRWRHFNPEIPKRSGKICDLEKFDAT 80
WD40-rpts
Query 81 FFGVHFKQAHTMDPQTRILIETAYEAVIDSGVNPKSLRGSKTGVYIGSCISESEKTWFYEKVSSGGFGITGCSRAMMANR 160
WD40-rpts (______________________________WD 1________________
Query 161 ISYCLGLEGPSFLLDTACSSSMYALDNAFSAIRNGEIDAAIIDGFCRPFDKNASGYTRSETINCLFLQKKKHAKRVYASI 240
WD40-rpts ______________)
Query 241 VYSKTNCDGYKPEGITYPSGIVQEKLLDQFYKDIDHKPSDLGYLEAHSTGTVVGDPEECKAIDNVLCSQREEPLLVGSVK 320
WD40-rpts
Query 321 SNVGHSEAASGICSLVKACFAFETGLIAPNINFTEVKQIIAPLAEGRLIVVKDVVPLPKPYIGINSFGFGGANAHALLKG 400
WD40-rpts
Query 401 YPKSKNNFGIPADDVPRLLTWAGRTEEAVEEIFNAVEKNPLDAEFIGLLQNIQEEDVSGMVFRGYAIFAKQGTGPCKLLA 480
WD40-rpts
Query 481 KDVQHYTGLQRPIVWVYSGMGSQWNQMGNSLMIIPRFRESVEICHQILLAKGLNLIHILTSNDPEVYQNILNSFVGIAAV 560
WD40-rpts
Query 561 QIGLTDVLRSLNIQPDYIIGHSVGELGCAYADGGLTAQQMILAAYYRGRVSVDLEKIRGSMAAVGLGYKTVLHMLPKSIE 640
WD40-rpts (_______________________________________WD 2__________________________
Query 641 TACHNGPDSCTISGPVDDVAQFVADLKTKGIFAKEVPCSNIAYHSKYISHMGPPLLNYMNEIIPHPKPRTKKWLSTSVPK 720
WD40-rpts _____________)
Query 721 IDWNKDKAKFCSAEYHTNNLLNSVLFDETFSLIPKNSLTIEVAPHGLLGAILKRSMPSGVHIPLTNRGNQNNASFFLSAL 800
WD40-rpts
Query 801 GKIYLNGVLLPAANLYERIQFPVSRTTPSVSSLIRWDHSEDWFVTKYENMKTKSSGERVFSVNLASDNEEFLSGHIIDGK 880
WD40-rpts
Query 881 ILVPATCYLQYVWETFSLMYHGPSYMDVPVEFEDIRFIRATSMPVDGKVDLTVMIHYGTGHFEVYNFQSKSKFPMIAKKD 960
WD40-rpts
Query 961 FYKELKLRGYHYNGAFQAVNLARSDGLFGRVQWNYNWVTFMDAMLQIQILGTDSRNLLLPTKIRKLKINGVHHFDLMTKM 1040
WD40-rpts
Query 1041 DPENRVFDVYVDPMYDRIIAGGIEIFGLHASLVQRRRPPGIPVLEEYVFLPFFSSSILSLKNAARVCVQIAIENNPTLKL 1120
WD40-rpts
Query 1121 KLVEVGADGKNHMLTEFIEAIQDLPVITGDYILLTSQNLEDLPGVHIENGSLSTQTNCHIIIIGGYEEDEVHEKITSAYN 1200
WD40-rpts
Query 1201 VLVDNGYIVFRQKCAKNVSCKIAEKFRTISKIPINNTEENLVLLQKISKKLTVPPVLVKVSQHDKTFEWILELQSAIITK 1280
WD40-rpts
Query 1281 APVVVYSFNEKLNGQIGLVNCLRKEPDGNLIRCFFIDDDSAPDFDLSHPFYSTQYSLGLAFNIYRNPSKRLDHIYGNVIQ 1360
WD40-rpts
Query 1361 RGDLSSLQWLKGPFNSQNCHIKIAFSSLNFRDVMLATGRLAVELYGSSRIDQNCVLGFEYSGINMLTGRRIMSMVVKGGV 1440
WD40-rpts
Query 1441 ASYVEKPSKLIWDIPDDWSLEEAATVPVVYITVYYAFFMATDIRKGKSILIHAGTGGIGLAAIRVALAYNLEVFTTCSTA 1520
WD40-rpts
Query 1521 NKKEFLLKTFPKLKESHIGNSRNTSFELMVHRETNGKGVDFVLNSLSEEKLLASLRCLGKSGHFLEIGKYDMANDNKIGL 1600
WD40-rpts
Query 1601 GCFLKEITFHAVLADSLLVAPDEDIWHLKSLIDMDISNGIIQPLPVKVFLAHEIEQAFRHLIGGKHIGKVVIQVREQPHD 1680
WD40-rpts
Query 1681 PSTLPVRVLNQVYFKHNHTYVIPGGLGGFGMELADWMAIRGARKLLLSSSRGITKDYQLYRIALWKTYGCEVAISTADIT 1760
WD40-rpts
Query 1761 SKKGCAQLLSEANGMGPVGGIFNLAVVLKDCIFSNQNVNQFLECFAPKAIATTYLDDLSRIYCPELEHFVVFSSVSCGRG 1840
WD40-rpts
Query 1841 NAGQSNYGMANSVMERIIEHRNREGFPGKAIQWGAIGEVGLVADMAEDKIDMEIGGTLQQRISSCIQELDHLLCADASIV 1920
WD40-rpts
Query 1921 SSMVVAEKRTMRSGQGNVIDAVMNIMGIRDLKSVSLSTTLSEMGMDSLMAVEIKQTLERDFELILTPQDLRHLTFQKLQE 2000
WD40-rpts
Query 2001 FIDAKEKENTDGIQIIFASDNKLLGMELLIRNLGDEANCDQIIIPLQTSAAPSKQNLQPNIIIPGLEGTAGRAWYQLGSK 2080
WD40-rpts
Query 2081 LQSPAIVLQLHQFAHLENLKDVAQQSFDQIKLILKQTEPFYIIAYSYGTFVALLLAEMLENSGFRGHLMLLDGAPHFLKR 2160
WD40-rpts
Query 2161 LTNLHLGEQFSDNDLYDLLFSSIVNHIFPEASKESMSTVFHQVDCLSDKMSLFMNYVEKQNMYSKKYSSTMVKAMFNRVK 2240
WD40-rpts
Query 2241 MAASFDLDGIIKIKSPITLVRPAEASLQDIDEDYCISLLTSGVVTLKVIEGNHTTMLDNPSLSQIIDDFDPVLLEDKHFE 2320
WD40-rpts
Query 2321 EYIRNDKPVSVV 2332
WD40-rpts
 2 WD40-repeats found in QUERY=FBpp0290992 (Len=2332): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 110-175 2.98 237.56 0.03846 20.0% 10.94 WD 2: Seg 14 571-654 3.17 245.69 0.03001 15.0% 25.21Multiple sequence alignment of 2 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 110-175 SGVNPKSLRGSK----------TGVY--------------------------IGSCI--------SESEKTWFYEKVSSGGFGITGCSRAMMANRISYCLGLEGPSFLLD WD 2 571-654 LNIQPDYIIGHSVGELGCAYADGGLTAQQMILAAYYRGRVSVDLEKIRGSMAAVGLGYKTVLHMLPK--------------------SIETACH------NGPDSCTISG WD40 Template TGECLRTLSGHT----------SGVT--------------------------SVSFS--------PD--------------------GKRLVSG------SEDGTIKVWD |
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