Input parameters:

  Query = FBpp0290898 (Len=440)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0290898, Len=440):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQRSNEEFRETNAPICNNQQQRCVDFVRNNANIGNRTEEVLNLLWELANEYWQWFLQKLGQLKRLCFRPECRIDPEILER 80  
WD40-rpts              (_________________________WD 1_________________________)    (___________

Query       81 ISQTRGWKTSVIRFIECHPSSSLMAFLTNDDVVLICDKNYDCPTKIQSVRQKDTTCVAFRPWSQTCEFAVGCAAGICLWS 160 
WD40-rpts      ___________WD 2_____________________)   (_________________WD 3_________________)

Query      161 DSRRLNANRNIRRMMGTHHLQVLQDKGHNYVTSMQWNEDGTILVTAAFGSSHIMLWEPDCQQKIRLIPNPKSLGSFSLLR 240 
WD40-rpts                       (_________________WD 4_________________)(___________________WD 

Query      241 FSPDFHVLFCASCDAGASLCQLNRSKWKLKQILGQQRIQSAVWTTCGSTLLYACYGSTRVYSCTSDGEDSVFLRPQSIWR 320 
WD40-rpts      5___________________)   (_________________WD 6________________)                 

Query      321 VQLIMDLQLVTTCAGQRLCCGEPQCLAMDPLGIYMASIFKEQSFVLLCILHTSRWGNVKLLPVEFIYCDMDGDQYPAYIS 400 
WD40-rpts                   (_______________WD 7______________)            (___________________

Query      401 FGVLKAEIRFLIIAWNTGHFQRYDITAQCFRDAQLYHNIN 440 
WD40-rpts      WD 8___________________)                

8 WD40-repeats found in QUERY=FBpp0290898 (Len=440):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-64       4.62  305.59  0.00473        7.5%     21.91
  WD 2:  Seg  2    69-117      7.07  406.85  0.00020       17.5%     44.18
  WD 3:  Seg  6   121-160      5.11  325.86  0.00252       20.0%     50.57
  WD 4:  Seg 11   178-217      5.71  350.56  0.00117       22.5%     54.02
  WD 5:  Seg 15   218-261      6.90  399.54  0.00026       20.0%     55.85
  WD 6:  Seg 19   265-303      6.81  395.96  0.00029       10.0%     56.33
  WD 7:  Seg 26   334-368      4.49  300.15  0.00560       10.0%     41.72
  WD 8:  Seg 31   381-424      4.44  297.96  0.00599       10.0%     31.16

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-64     ------R----ETNA----------PICNNQQQRCVDFVR--NNANIGNRT-EEVLNLLWELANEYWQWFLQKLGQLKR
   WD 2   69-117    -P----E----CRIDPEILERISQTRGWKTSVIRFIECHP--SSSLMAFLT-ND--------DVV----------LICD
   WD 3  121-160    -D----C----PTKI----------QSVRQKDTTCVAFRPWSQTCEFAVGC--A--------AGI----------CLWS
   WD 4  178-217    -H----H----LQVL----------QDKGHNYVTSMQWNE--DGTILVTAAFGS--------SHI----------MLWE
   WD 5  218-261    PDCQQKI----RLIP----------NPKSLGSFSLLRFSP--DFHVLFCAS-CD--------AGA----------SLCQ
   WD 6  265-303    -S----K----WKLK----------QILGQQRIQSAVWTT--CGSTLLYAC-YG--------STR----------VYSC
   WD 7  334-368    AG-----------------------QRLCCGEPQCLAMDP--LGIYMASIF-KE--------QSF----------VLLC
   WD 8  381-424    LP----VEFIYCDMD----------GDQYPAYISFGVLKA--EIRFLIIAW-NT--------GHF----------QRYD

   WD40 Template    TG----E----CLRT----------LSGHTSGVTSVSFSP--DGKRLVSGS-ED--------GTI----------KVWD