Input parameters:

  Query = FBpp0290556 (Len=683)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0290556, Len=683):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNSNIFLGTAENGLRHDKIVILDAGAQYGKVIDRKVRELFVETDILPLDTPAATIRNNGYRGIIISGGPNSVYAEDAPSY 80  
WD40-rpts                                                                                      

Query       81 DPDLFKLKIPMLGICYGMQLINKEFGGTVLKKDVREDGQQNIEIETSCPLFSRLSRTQSVLLTHGDSVERVGENLKIGGW 160 
WD40-rpts                                                                                      

Query      161 STNRIVTAIYNEVLRIYGVQFHPEVDLTINGKQMLSNFLYEICELTPNFTMGSRKEECIRYIREKVGNNKVLLLVSGGVD 240 
WD40-rpts                 (___________________________________________WD 1_____________________

Query      241 SSVCAALLRRALYPHQIIAVHVDNGFMRKKESEKVERSLRDIGIDLIVRKEGYTFLKGTTQVKRPGQYSVVETPMLCQTY 320 
WD40-rpts      _____________________)                                                          

Query      321 NPEEKRKIIGDIFVKVTNDVVAELKLKPEEVMLAQGTLRPDLIESASSMVSTNAETIKTHHNDTDLIRELRNAGRVVEPL 400 
WD40-rpts                                                                                      

Query      401 CDFHKDEVRDLGNDLGLPQELVERQPFPGPGLAIRVLCAEEAYMEKDYSETQVIIRVIVDYKNKLQKNHALINRVTAATS 480 
WD40-rpts                                                                                      

Query      481 EAEQKDLMRISSNSQIQATLLPIRSVGVQGDKRSYSYVVGLSTSQEPNWQDLLFLAKIIPRILHNVNRVCYIFGEPVQYL 560 
WD40-rpts                                                                                      

Query      561 VTDITHTTLNTVVLSQLRQADDIANEIIMQAGLYRKISQMPVVLIPVHFDRDPINRTPSCRRSVVLRPFITNDFMTGVPA 640 
WD40-rpts                                                                                      

Query      641 EPGSVQMPLQVLNQIVRDISKLDGISRVLYDLTAKPPGTTEWE 683 
WD40-rpts                                                 

1 WD40-repeats found in QUERY=FBpp0290556 (Len=683):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   172-262      3.11  242.97  0.03261       20.0%     23.12

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  172-262    EVLRIYGVQFHPEVDLTINGKQMLSNFLYEICELTPNFTMGSRKEECIRYIREKVGNNKVLLLVSGGVDSSVCAALLRRALYPHQIIAVHV

   WD40 Template    TGECLRTLSGHTSGVTSVS--------------FSPDGKR----------------------LVSGSE---------------DGTIKVWD