Input parameters:

  Query = FBpp0290295 (Len=1108)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0290295, Len=1108):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKLETDSDSSEEFFDAEDTTPNRHSTLCRKLPPEVAQEFIFPEPAVRVNAAASSDSDATPIGAGTPATRSPTNSLGARL 80  
WD40-rpts                                                                                      

Query       81 KPQDAGVFVEPKPVIGPLGRQRFHELRQCMQNDEDDNPGNTLTPDSQNSSTDGIFTNRSTHPFKVIETDAMSIQSMTSLG 160 
WD40-rpts                                                                                      

Query      161 RVGRILAGSIDPSAISIDRESLASLNAQQQKQQAQQQQQAQPTSSTSSNTPPSVGNTSSGMSTPRVSPKHQQSGKEVAAT 240 
WD40-rpts                                                                                      

Query      241 TTGIPSAASSAQSSGVGSMVLQEPDVIASTKLAQSKTTDSITSSGPVAPPRRKKKSRNCSISSSDQYSLPPADNEDTDSD 320 
WD40-rpts                                                                                      

Query      321 TRSVKSVQGLQQKLRDDFVMEFESSLNNATSSASNITLTCSSTNTVVSASASTSAASSSLPSTIAIHMRPMVASVTIAGP 400 
WD40-rpts                                                                                      

Query      401 KLTQSLGSSSTSVHSKPSPSNSAKSNSAPARVSSIDPNQGLNLFKAIQGGYVVKPRDEASNKAQGPSQDEIERIEKMLME 480 
WD40-rpts                                                                                      

Query      481 SANRPKLAGTGSNSLGSSTRYPGFYRGVNDKERRKSAGDEDVLKQMNIYVRTRTSSGKQLTDFEILEQVPVKNLDTGENM 560 
WD40-rpts                                                                                      

Query      561 PLSEMRSPPVPEGWNPLSLHILKLTSHLEVIQKESDEESVIGIPPSIEGQQPDEEELETEDGSRLKKKTARIKRFFGSTM 640 
WD40-rpts                                                                                      

Query      641 RKTVDKAKSIASEVSHARHKEDVADIVDAMNPEQNIKIKASSSNKGPYEFTKLQHVQDLSGEDTSAVWCMKFSSCGRLLA 720 
WD40-rpts                                                          (_________________WD 1______

Query      721 TAGQDKVLRIWVLKDAYPFFQDMRNKYNADQKSSPTPSQESLVSQHSAEEAIAMATAAEKCTGPFMPKPFCTYNGHTSDL 800 
WD40-rpts      ___________)(___________________WD 2___________________)          (_____________

Query      801 LDVSWSKNYFILSSSMDKTVRLWHISRKECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDG 880 
WD40-rpts      ___WD 3________________)(__________________WD 4__________________)(_____________

Query      881 QTKLITAANFCQNGQFAVVGSYDGRCIFYNTDQLKYHTQIHVRSTRGKNRIGRKISGIEPMPGEDKILVTSNDSRVRLYD 960 
WD40-rpts      ______WD 5___________________)              (_______________WD 6_______________)

Query      961 LRDLNLSCKYKGYLNVSSQIKGSFSHDGKYIIAGSENQCIYIWKTNHDYSKLSSVRRDRSDFWEGIKAHNATVTCAIFAP 1040
WD40-rpts         (__________________WD 7_________________)                   (_______________W

Query     1041 HPEAIIKPEPDEISNEKLAHNQPDPLVEQHKKGCGYVLVSADFNGAIKVFINKTKPKHSSLPYTAIAD 1108
WD40-rpts      D 8______________)(______________WD 9_____________)                 

9 WD40-repeats found in QUERY=FBpp0290295 (Len=1108):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   693-732      8.00  445.30  6.2e-05       30.0%     56.74
  WD 2:  Seg 16   733-776      5.20  329.51  0.00225       17.5%     34.77
  WD 3:  Seg 19   787-824      7.17  410.89  0.00018       32.5%     48.22
  WD 4:  Seg 23   825-866      7.01  404.35  0.00022       30.0%     54.82
  WD 5:  Seg 27   867-910      7.82  437.61  7.9e-05       25.0%     54.39
  WD 6:  Seg 32   925-960      6.26  373.42  0.00058       12.5%     45.82
  WD 7:  Seg 35   964-1004     7.61  428.91  0.00010       30.0%     55.16
  WD 8:  Seg 39  1024-1058     6.72  392.45  0.00032       17.5%     38.04
  WD 9:  Seg 42  1059-1091     4.68  308.14  0.00437       20.0%     39.20

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  693-732    -L-Q----HVQDLSGEDTSAVWCM--KFSS-CGRLLAT-AGQDKVLRIWV
   WD 2  733-776    LK-D-AYPFFQDMRNK-YNADQKS--SPTP-SQESLVSQHSAEEAIAMAT
   WD 3  787-824    -P-K----PFCTYNGH-TSDLLDV--SWSK-NY-FILS-SSMDKTVRLWH
   WD 4  825-866    ISRK----ECLCCFQH-IDFVTAI--AFHPRDDRYFLS-GSLDGKLRLWN
   WD 5  867-910    IP-DKKVALWNEVDGQ-TKLITAA--NFCQ-NGQFAVV-GSYDGRCIFYN
   WD 6  925-960    ---------TRGKNRI-GRKISGI--EPMP-GEDKILV-TSNDSRVRLYD
   WD 7  964-1004   -L-N----LSCKYKGY-LNVSSQIKGSFSH-DGKYIIA-GSENQCIYIWK
   WD 8 1024-1058   EG----------IKAH-NATVTCA--IFAP-HPEAIIK-PEPDEISNEKL
   WD 9 1059-1091   ------------AHNQ-PDPLVEQ--HKKG-CGYVLVS-ADFNGAIKVFI

   WD40 Template    TG-E----CLRTLSGH-TSGVTSV--SFSP-DGKRLVS-GSEDGTIKVWD