Input parameters:

  Query = FBpp0289877 (Len=1695)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0289877, Len=1695):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLCPQAGITRCNIDESMDSTNSSSTCHSPMIYQRDETQLLQPGDASNLEANNPMSSGGGGGTANGPVSPSISFWFRLNRI 80  
WD40-rpts                                                                                      

Query       81 ILRLCSTHQFKNLQVEMLYQRYFLRMNQSNTTHILALLLALILALSCTLLVFTTLQLRRSTSLLLEISEIGLDANATVGN 160 
WD40-rpts                                                                                      

Query      161 LTTATMKPPTLASSDQMTRGSSIPLLALASNGSWAGNGAVGGELKSAHNHNIADFEADHNGQLVWRRQKRKHYRRLHKHR 240 
WD40-rpts                                                                                      

Query      241 YKHKSHQQHRTRYRMREKRSLQDAGLVKGGGIQTQLIVDTATDDDADVYTVASDDDDDVDGGRSAGSKHITYTPRVRDYN 320 
WD40-rpts                                                                                      

Query      321 QISHAERDEVLNTSSNAGVATDNSDPPLGYGQLIPLILMQVDESVLVFLIVMLICGIVYAFLLCILSKPAMNEIFLVLVS 400 
WD40-rpts                                                                                      

Query      401 YVILGTFLAIEVAVSYAMQPSKSFNGSACCIVLIYMTYTMLPLRLREALIGGILLSVVHLYTCLRLNAMQDEAVEMIHWE 480 
WD40-rpts                                                                                      

Query      481 ELLCTLVALLLANLTGVYTHWPKEKAQRKAFIETRQCIEARLRTQRENQQQERLLLSVLPRHVAMEMKDDIAGQPRDTQF 560 
WD40-rpts                                                                                      

Query      561 HKIYIQRHENVSILFADICGFTSLSDQCTAEELVRLLNELFARFDRLAAEHHCLRIKLLGDCYYCVSGLPEPRPDHAHCA 640 
WD40-rpts                                                                                      

Query      641 VEMGLDMIDAIALVREVMAVNVNMRVGIHTGRVHCGVLGLVKWQFDVWSNDVTLANHMESGGIPGRVHITKETLKCLDGD 720 
WD40-rpts                                   (______________________WD 1_____________________)  

Query      721 YEVEVGKGNERNSYLKDHQIETYLIVPGDIYRPHKKSRNRLQVNGNISKELRMMGHGTAQKHTSKFGFGDSSESAKDPED 800 
WD40-rpts                                                                                      

Query      801 EVNEYLMRAIDARSIDHLRAEHCQSLLLCFKDNVLERKYASEPDRMLCVYFYCSLLVLLGTSIMRLVVFQSSLLTLALST 880 
WD40-rpts                                                                                      

Query      881 GALLLLGFLVFLVACHKINFQLPSDIKRFSLRIHSNRRISQLFAFASVALIVLTTLLAMFQESGRQMELLQRRRFWLDVN 960 
WD40-rpts                                                                                      

Query      961 GSISLNDTELNTKMYDAEEPDCDFYLAYNTFLLLTLLSMMSCATYQVLRILLKLLLLLLASGSYMACSSNLYSRSREMSQ 1040
WD40-rpts                                                                                      

Query     1041 ELANEEALLRYIIDSIFLFAFMLALIFHSHQTEATYRLDFIWKLQATEEKEDMEHLQAYNRKLLENILPVHVAEHFLSRE 1120
WD40-rpts                                                                                      

Query     1121 KHLDDLYHEQCDSVCILFASIPNFSEFYVELEGNNEGVECLRLLNEIIADFDELLSEERFRCIEKIKSTGATYMAASGLT 1200
WD40-rpts                                                                                      

Query     1201 ANTCDRVNFSHVTAMADYALQLFDKIEEVNMHSFNNFRMRIGINIGPVVAGVIGACKPQYDIWGNAVNVASRMDSTGLVD 1280
WD40-rpts                                                                                      

Query     1281 HIQVTQEMQQILEGRGFELTCRGSVDVKGKGSMITYFLKGRRPIDAKELELAKTEVEPPKTLTLAKEPEKLDSGTATEKQ 1360
WD40-rpts                                                                                      

Query     1361 REQVKEQGSTEQEDDLLPSPDIDMNSNMQNLTAQRRKSLCRQHNISSSFGTTVSSSTGITPSISNSSSVVTIGALPAILR 1440
WD40-rpts                                                                                      

Query     1441 GGNPLSNANPNATDSCSECGGASKSLATPTAPPRTLVADLKDEIARDEKIGLKDSIENLEILLKNNISLSDLSNKQQQNL 1520
WD40-rpts                                                                                      

Query     1521 RGETSSSTTTTLRKRDTIVSFNVTETVTTTAAPFTSSSGSSNSSSQQKKRRSVTTIAASFTTSTTTRLLSNESQSSTQTA 1600
WD40-rpts                                                                                      

Query     1601 PGTLESGGSVPGQSSTENSSQDWQPRTASLEPNRSPIKTSQSMSPIGQLTTEVFVLPNSRSMVLISSTNGSVSALATGGG 1680
WD40-rpts                                                                                      

Query     1681 GASSPRTGLLQDVST 1695
WD40-rpts                     

1 WD40-repeats found in QUERY=FBpp0289877 (Len=1695):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   670-718      3.08  241.87  0.03372       25.0%     12.89

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  670-718    TGRVHCGVLGLVKWQFDV-WSNDVTLANHMESGGIPGRVHITKETLKCLD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD---GKRLVSGSEDGTIKVW-------D