Input parameters:

  Query = FBpp0289301 (Len=427)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0289301, Len=427):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQYKSKDADKLNEENESIIRKRLPSIFRKRSAKLKRDLEDAVREPSSSSNAASSPGAASLQRNSSPAQFVGGLIGDEDFD 80  
WD40-rpts                                                                                      

Query       81 EAAINGAMEAIGLDDNEYISARFTAGEIAENSRASIDTLKATGYLGQANPTKILMKFEAHENESHAVRWSPVERMVATGG 160 
WD40-rpts          (___________________WD 1__________________)   (_________________WD 2________

Query      161 ADRKVKLWDIGKNSTEPRAVLSGSSAGINSVDFDSTGAYILGTSNDYGARVWTVMDNRLRHTLTGHSGKVMAAKYVQEPI 240 
WD40-rpts      ________)     (_________________WD 3________________)   (_________________WD 4__

Query      241 KVVTGSHDRTLKIWDLRSIACIETKFAGSSCNDLVTTDSLGSTIISGHYDKKIRFWDIRTEKQADDVLMPAKITSLDLSK 320 
WD40-rpts      ______________)   (_________________WD 5________________)  (_________________WD 

Query      321 DCNYLICSVRDDTIKLLDLRKNQVISTFTNEHFKISCDFARASFNSSGLKIACGSADGAIYIWNVNGFLEATLKGHSTAV 400 
WD40-rpts      6________________)           (_______________WD 7______________)  (_____________

Query      401 NAVSWSPNNNMLASVGKNKRCTIYSES 427 
WD40-rpts      ____WD 8________________)  

8 WD40-repeats found in QUERY=FBpp0289301 (Len=427):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    85-127      5.39  337.19  0.00178        5.0%     27.22
  WD 2:  Seg  5   131-169      9.48  506.47  9.3e-06       25.0%     51.76
  WD 3:  Seg  9   175-213      9.58  510.25  8.2e-06       32.5%     53.02
  WD 4:  Seg 13   217-255     10.18  535.23  3.8e-06       32.5%     56.29
  WD 5:  Seg 17   259-297      9.28  497.80  1.2e-05       27.5%     55.10
  WD 6:  Seg 21   300-338      7.74  434.26  8.7e-05       27.5%     52.86
  WD 7:  Seg 26   350-384      6.38  378.05  0.00050       22.5%     35.29
  WD 8:  Seg 30   387-425      9.65  513.11  7.6e-06       30.0%     57.14

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   85-127    NGAMEAIGLDDNEYISARFTAGEIAENSRASIDTLKATGYLGQ
   WD 2  131-169    TKILMKFEAHENESH----AVRWSPVERMVATGGADRKVKLWD
   WD 3  175-213    TEPRAVLSGSSAGIN----SVDFDSTGAYILGTSNDYGARVWT
   WD 4  217-255    NRLRHTLTGHSGKVM----AAKYVQEPIKVVTGSHDRTLKIWD
   WD 5  259-297    IACIETKFAGSSCND----LVTTDSLGSTIISGHYDKKIRFWD
   WD 6  300-338    TEKQADDVLMPAKIT----SLDLSKDCNYLICSVRDDTIKLLD
   WD 7  350-384    ----NEHFKISCDFA----RASFNSSGLKIACGSADGAIYIWN
   WD 8  387-425    GFLEATLKGHSTAVN----AVSWSPNNNMLASVGKNKRCTIYS

   WD40 Template    GECLRTLSGHTSGVT----SVSFSPDGKRLVSGSEDGTIKVWD