Input parameters:

  Query = FBpp0289034 (Len=1216)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0289034, Len=1216):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADSGKHASGGHNGANSERRNDQNGRNGRNGHNGHSQGRQLQFLDNPPPSQATFNVRSLWPSIKSGVRRLRSQLLRRTAT 80  
WD40-rpts                                                                                      

Query       81 TGPAMAPSGGADLPPSDNDRAAPSRSGDGNTETDGSNPHRRLDESSVMGSMQSVKNYIKRTRPGRKKRKDDEDFTSSAGY 160 
WD40-rpts                                                                                      

Query      161 DADDGERRIINLNGPQPTKYGNNRITTAKYSFISFLPAFLFEQFRRYSNCFFLLIAILQQIPEVSPTGRYTTLVPLMFIL 240 
WD40-rpts                                                                                      

Query      241 SVSAIKEIIEDIKRHRADNEINHRSIERLDSGSWCTVRWSELTVGDIIKVGINTFFPADLILLSSSEPQAMCFIETANLD 320 
WD40-rpts                                                                                      

Query      321 GETNLKIRQALPATAELLETKDLQRLEGRIECELPNRHLYEFNGVLRETGKPPAALGNDQVLQRGAILRNTAWVFGIVVY 400 
WD40-rpts                                                                                      

Query      401 SGQETKLMKNSTSAPLKRSTVDKLTNTQILMLFMILISLCIISGLCNLFWTREHSETDWYLGLTDFKTKSLGYNLLTFFI 480 
WD40-rpts                                                                                      

Query      481 LYNNLIPISLQVTLELVRFLQAIFINYDIEMYHEESNTPAMARTSNLNEELGMVKYIFSDKTGTLTQNVMEFKKCSIAGY 560 
WD40-rpts                                                                                      

Query      561 VYTAERTPEESQLVQNILGRHETSAVIEEFLELLSVCHTVIPERKENGNMIYHAASPDERALVEGAQKFGYIFDTRTPKY 640 
WD40-rpts                                                                                      

Query      641 VEINALGVRKRYEVLNVLEFTSSRKRMSLIVRTPENKIKLFCKGADTVIYERLAPQGQAFREQTLRHLEEFASDGLRTLC 720 
WD40-rpts                                      (_______________________________________________

Query      721 LAVADIRPDVYQEWSQTFDKASVALQNRESKLEDAANLIENNLRLLGATAIEDRLQDGVPETIASLLDAGIYIWVLTGDK 800 
WD40-rpts      ____________WD 1__________________________________________________________)     

Query      801 QETAINIGYSCRLISHSMDIIILNEESLDATREVIHRHYGEFKSSSAKDANVALVIDGTTLKYALSCDLRNDFQDLCILC 880 
WD40-rpts                                                                                      

Query      881 RVVICCRVSPMQKAEVVEMVTQSTNAVTLAIGDGANDVAMIQKANVGIGISGVEGLQAACASDYSIAQFRYLQRLLLVHG 960 
WD40-rpts                                                                                      

Query      961 AWNYARISKLILYSFYKNVCLYVIELWFAVYSGWSGQILFERWTIGLYNVLFTAMPPFAMGLFEKFCTAETMIRYPMLYK 1040
WD40-rpts                                                                                      

Query     1041 TSQNAKLFNVKVFWIWIFNALLHSVFLFWLPLAAYTKEVIWSDGKTSDYLLMGNLVYTYVIVTVCLKAGLITNSWTWLTH 1120
WD40-rpts                                                                                      

Query     1121 LAIWGSIVLWFGFLLIYSHVWPMFKFASNFRGMDIQLLSTPVFYFCLMLVPITTLLIDVICKLVHNTVFKTLTEAVRETE 1200
WD40-rpts                                                                                      

Query     1201 IRRSDISEVMNEPRSS 1216
WD40-rpts                      

1 WD40-repeats found in QUERY=FBpp0289034 (Len=1216):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 20   673-795      2.88  233.49  0.04352       22.5%     27.87

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  673-795    TPENKIKLFCKGADTVIYERLAPQGQAFREQTLRHLEEFASDGLRTLCLAVADIRPDVYQEWSQTFDKASVALQNRESKLEDAANLIENNLRLLGATAIEDRLQDGVPETIASLLDAGIYIWV

   WD40 Template    TGECLRTLSGHTSG-----------------------------VTSVSFSPDGKR------------------------------------LVSGS-------EDG-----------TIKVWD