WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0288527 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0288527 (Len=3722) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0288527, Len=3722): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRSEIKRPDEIVRMTTADNLKFAVLIGLIEVGQVTNREVVNTVLHLLVGGEFDMELNFVIQDAQNIKHMLELLDHCPPNL 80
WD40-rpts
Query 81 QAEIWSVFIAILRKSVRNLQACTDVGLIEHVLVRLQRSETVVADLLIEMLGVLASYSITVKELKLLFGTMKATNGKWPRH 160
WD40-rpts
Query 161 SAKLLNVLRQMPHRNGPDVFFSFPGRKGSAMVLPPLAKWPYENGFTFTTWFRLDPINSVNIEREKPYLYCFKTSKGVGYT 240
WD40-rpts
Query 241 AHFVGNCLVLTSMKVKGKGFQHCVKYEFQPRKWYMIAIVYIYNRWTKSEIKCLVNGQLASSTEMAWFVSTNDPFDKCYIG 320
WD40-rpts
Query 321 ATPELDEERVFCGQMSAIYLFSEALTTQQICAMHRLGPGYKSQFRFDNECYLNLPDNHKRVSHFQLLPATLGASALSGGS 400
WD40-rpts
Query 401 GSGTGSGTGNDASAAAAAAVAAGQQQQLQLQFQILAAEQEARAIDWSDEKLDLNAAFVKIRAVLTARNAVTLAGSSSTGT 480
WD40-rpts
Query 481 TAVATAAAAAAAAGAGAGTTAAATSAAAAAAATQNENDAAVGQQQHATHHHATAATGSADDPLGHLPTGNASSSSSSFEQ 560
WD40-rpts
Query 561 LRRMSSVSSLNSMVGSADTEEVNQLKAVLYDGKLSNAIVFMYNPVATDGQLCLQSSPKGNVSYFVHTPHALMLQDVKAVV 640
WD40-rpts
Query 641 THSIHCTLNSIGGIQVLFPLFSQLDMAHEGLGDIKRDPTLCSKLLGFICELVETSQTVQQHMIQNRGFLVISFMLQRSSR 720
WD40-rpts
Query 721 EHLTLEVLGSFLNLTKYLVTCLSANSDLLLKQLFCFSFLTWQLLDHVLFNPALWIYTPANVQARLYSYLATEFLSDTQIY 800
WD40-rpts
Query 801 SNVRRVSTVLQTVHTLKYYYWVVNPRAKSGIIPKGLDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLT 880
WD40-rpts
Query 881 TMHEDENLHDVLQMLISLMSEHPSSMVPAFDVKHGVRSIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLY 960
WD40-rpts
Query 961 TLLAERLLLYEESLSLPTYNVLYEIMTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQTESLIDVKKLFLQD 1040
WD40-rpts
Query 1041 MTLLCNSNRENRRTVLQMSVWQEWLIAMAYIHPKSSEEQKISDMVYSLFRMLLHHAIKHEYGGWRVWVDTLAIVHSKVSY 1120
WD40-rpts
Query 1121 EEFKLQFAQMYEHYERQRTDNITDPALRQARPISTISGWEREELHQQQNGGSAAAVATNQTAAVKGSVSIASLEDVPPVV 1200
WD40-rpts
Query 1201 EEEVEELELEEVEIQEGPITEETEQKSVIANISDVYNEQLKTDATCNGNLEDVKEEEPVQQQIGDLEKQPEPSTPLGALR 1280
WD40-rpts
Query 1281 ETLQLGDDMDVEELELATAKDALNAEQHVSRVLQASEAALNDCKMAVDDVLQESSSVLKDEEIELAVNEVVQGVLNNEKK 1360
WD40-rpts
Query 1361 TQSQDNKDNKEQPGEQDVNVSLLNSKNLLNNNNNNNNNSPSPTPTTATATAETEAETEVNANEIVSSTEAPKAETETSVA 1440
WD40-rpts
Query 1441 PEVETPETAKPSPIVPSPVLATNQKTEDAANKLNNNEKLAEISASPEPPIVVETPEADLLQLSDSETKPNKETEAEDSVA 1520
WD40-rpts
Query 1521 LAVRDIVEQLIDKVIDATEAESASETKTETNNNEIPKKEKQTSEEPEDVETAETLAAAAKEIVQEVVEAALVMVQEESTQ 1600
WD40-rpts
Query 1601 EKPEKGANSEEEKNEIGKEEILLQLEEKPASTEVQETKIEGDLKKPEDPKGHSSVEPKTPNLEEPKPQETEQQKSQEVAE 1680
WD40-rpts
Query 1681 ELPQKPEEQVVAIVNQVLDTLVDDTVKAVAAEQTTQTSPAPEEQSPQILAMESPATSVRVKPTEVDSTTQTTPKNEAGSS 1760
WD40-rpts
Query 1761 LLVEQVQQVLQEDDAQQSAGMTIEDEDYSNQQAAAAVENANSSQLDANHYGPGNPESKQQQQRSKSGSTRPMFSPGPTRP 1840
WD40-rpts
Query 1841 PFRIPEFKWSYIHQRLLSDVLFSLETDIQVWRSHSTKSVLDFVNSSENAIFVVNTVHLISQLADNLIIACGGLLPLLASA 1920
WD40-rpts
Query 1921 TSPNSELDVLEPTQGMPLEVAVSFLQRLVNMADVLIFATSLNFGELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERT 2000
WD40-rpts
Query 2001 RYNVGALARDVPGAAHLQALIRGAQASPKNIVESITGQLSPVKDPEKLLQDMDVNRLRAVIYRDVEETKQAQFLSLAIVY 2080
WD40-rpts
Query 2081 FISVLMVSKYRDILEPPAEPQIQRQSPVLQRTAGGEAASARPLFPQWSHHVYPQFLPESHQNHNSNMQHQQQQQQQQQHQ 2160
WD40-rpts
Query 2161 QQQHYYQQQQQQQVVHNHSHHHMTAAYYQQQQHQQVAAGQQQHSPTPLATHSTSSSASSTATSQPASSSSLSSLASQSQQ 2240
WD40-rpts
Query 2241 QSHRQLHKQQQQQQQQQQQQQPHYHPHQPHYGLINGHQQHPQLNGKHYAENGSTAGYHPHSHPHPHGGYMRNGDTSTLQQ 2320
WD40-rpts
Query 2321 NGMPDYQAVGLMNGHGSGGTGNNNNSSLMNNMRNLRNGGGANSSSSPPGSHQVIQGVATAGAVNANAAVGVGMGGAVGVG 2400
WD40-rpts
Query 2401 MGGVAGGLDGGVVYKTSAINNNYRYNGRNASAGTGGRQIQDSDYEIIVVDENNPSVLADNDSHSSGPPSIKSVDSDVGSL 2480
WD40-rpts
Query 2481 NMNSTENEVPEVESSSEILIDDHKPSHSNDESWTDVNLNEDAAVQAASAGIVVGLVDNRGNVISDKHDPSHHNQQQQQQA 2560
WD40-rpts
Query 2561 GIIGQQQQHGSLGHSERGDKPDSEISVVRVPDGYGGAGSGGGVNSGQGQGVPSNQRPRPEELPMKAPALVAQLPLTTPSR 2640
WD40-rpts
Query 2641 EASLTQKLEIALGPVCPLLREIMVDFAPFLSKTLVGSHGQELLMEGKGLTTFKNSHSVVELVMLLCSQEWQNSLQKHAGL 2720
WD40-rpts
Query 2721 AFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLERREEERMCDHLITAARRRDNVIASR 2800
WD40-rpts
Query 2801 LLEKVRNIMCNRHGAWGDSSSTSSGGAIVGAVQKSPYWKLDAWEDDARRRKRMVQNPRGSSHPQATLKAALENGGPEDAI 2880
WD40-rpts
Query 2881 LQTRDEFHTQIAVSRTHPSGQHNGELLDDAELLIEDRELDLDLTGPVNISTKARLIAPGLVAPGTVSITSTEMFFEVDEE 2960
WD40-rpts
Query 2961 HPEFQKIDGEVLKYCDHLHGKWYFSEVRAIFSRRYLLQNVALEIFLASRTSILFAFPDQHTVKKVIKALPRVGVGIKYGI 3040
WD40-rpts
Query 3041 PQTRRASMMSPRQLMRNSNMTQKWQRREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVLTNYESKDLDLSLPSNYRDLSK 3120
WD40-rpts
Query 3121 PIGALNPSRRAYFEERYESWDSDTIPPFHYGTHYSTAAFTLNWLVRVEPFTTMFLALQGGKFDYPDRLFSSVSLSWKNCQ 3200
WD40-rpts
Query 3201 RDTSDVKELIPEWYFLPEMFYNSSGYRLGHREDGALVDDIELPPWAKSPEEFVRINRMALESEFVSCQLHQWIDLIFGYK 3280
WD40-rpts
Query 3281 QRGPEAIRATNVFYYLTYEGSVDLDGVLDPVMREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSAMPEDLCQML 3360
WD40-rpts
Query 3361 KFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYTASVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSN 3440
WD40-rpts
Query 3441 AASRRHLGDNFSQMLKIRSNCFVTTVDSRFLIACGFWDNSFRVFATETAKIVQIVFGHFGVVTCMARSECNITSDCYIAS 3520
WD40-rpts (___________________WD 1________
Query 3521 GSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSSNGPVLIHTTFGDLLRSLDPPAEFH 3600
WD40-rpts __________) (_____________________WD 2____________________)
Query 3601 SPELITMSREGFIVINYDKGNVAAYTINGKKLRHETHNDNLQCMLLSRDGEYLMTAGDRGIVEVWRTFNLAPLYAFPACN 3680
WD40-rpts (_________________WD 3________________) (__________
Query 3681 AGIRSLALTHDQKYLLAGLSTGSIIVFHIDFNRWHHEYQQRY 3722
WD40-rpts _______WD 4________________)
 4 WD40-repeats found in QUERY=FBpp0288527 (Len=3722): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 42 3489-3531 4.34 293.96 0.00678 27.5% 55.21 WD 2: Seg 46 3538-3584 4.65 306.65 0.00458 35.0% 51.10 WD 3: Seg 54 3628-3666 4.10 283.83 0.00928 27.5% 53.79 WD 4: Seg 57 3670-3708 3.01 239.17 0.03662 25.0% 46.82Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3489-3531 -A-------KIVQIVFGHFGVVTCMARSECNITSDCYIASGSADCTVLLWH WD 2 3538-3584 SIVGEGDVPTPRATLTGHEQAVTSVVIS----AELGLVVSGSSNGPVLIHT WD 3 3628-3666 NG-------KKLRHET-HNDNLQCMLLS----RDGEYLMTAGDRGIVEVWR WD 4 3670-3708 -L-------APLYAFPACNAGIRSLALT----HDQKYLLAGLSTGSIIVFH WD40 Template TG-------ECLRTLSGHTSGVTSVSFS----PDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |