Input parameters:

  Query = FBpp0288504 (Len=906)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0288504, Len=906):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSWAERVHRRAADLGNVVTSCGHPATAPAYPYRLEKVKFGVPLEEVCKHNNNIPGPLLVLILKLNKESPNRRDVFRAPG 80  
WD40-rpts                                                                                      

Query       81 HQGAMKKLIHFLQAGRLVNVDNYSVFTIASVLKKFLRKIPNGIFGRSGEMELFAINDLQNEAEQTERLHRLFGSLPKYTQ 160 
WD40-rpts                                                                                      

Query      161 HLLVLLFGTFRVIASNAAHASTGMTSEALGVSVAPSFFQSCVSDGKTARMEDVLKFKVSTKIMQNIIDKFATHDIFGRDN 240 
WD40-rpts                                                                                      

Query      241 YEYYARVTGRILKVQDEWICSFQYPPPPRGKLAQQKYALQHSLEAEKTWLQCQCERWGLLAQEESRSTPALLTSSSSALE 320 
WD40-rpts                                                                                      

Query      321 NSVLSLGVSPEHSFIESCARLSVSLEGPGIYAMTSSPLPAKRNGNGNGNATDYDYDDYADDDEDNDELDGVHDFGAELEI 400 
WD40-rpts                                                                                      

Query      401 SSIAPPQGSRGIYRHKQRAQQQPHHYQQQQQQQQVPPQHQRDYDEDDDDDEDEMTFIKRRYRQNKKKPAPPSSSHHQRRL 480 
WD40-rpts                                                                                      

Query      481 RTGTKSLDGGGERRTGSGAAGGSGGGASGSAVGNPTPPKLKQRTCSRCNRGIRHSSSCSSNSAGATGSNSGGGGNGGSGA 560 
WD40-rpts                                                                                      

Query      561 GNGGGAEGGMTMEELRAVNRYAESTKSLSYLPQVHERQTARMRTRSEWFLGPRDAVVTLQLPADTCSNCCLAAAAGYLGG 640 
WD40-rpts                                                (_____________________________________

Query      641 GSTRDMRQAQTEGERNQAALLYHFYRRQQQQQQQQQEQHYDDMMDTEDSYGQQKEQQHQQQQQQEQQQQHIHSKGLLRPP 720 
WD40-rpts      ____________________WD 1________________________________________________________

Query      721 PMQHQHQQQQQQRRLLLDVNSGSYNAGLTTLTTNNTHFGDDLANYLHEPLSNTCYYSSSQCLNRLPPVVVVREDQQLTEV 800 
WD40-rpts      )                                                                               

Query      801 TDSDGDGDSLDGGVLHTLQAHELQHHVEPRQAAMLLLRHSTPQQQHRSSMASSLYQSFDVTSADLSHGNDHNRSGHNNSN 880 
WD40-rpts                                                                                      

Query      881 NNHHHNNNFATVIFNVLDFFWQHPFE 906 
WD40-rpts                                

1 WD40-repeats found in QUERY=FBpp0288504 (Len=906):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   603-721      2.89  234.14  0.04268       27.5%     -6.09

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  603-721    RTRSEWFL-GPRDAVVTLQLPADTCSNCCLAAAAG-YLGGGSTRDMRQAQTEGERNQAALLYHFYRRQQQQQQQQQEQHYDDMMDTEDSYGQQKEQQHQQQQQQEQQQQHIHSKGLLRPPP

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-----------GKRLVSGS--------------------------------------------ED--------------------------GTIKVWD