Input parameters:

  Query = FBpp0111544 (Len=2351)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0111544, Len=2351):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNARELALIEKWADIATPATPNRPTLSPTSPPALHRSIVKFCCCPQRRRYNLKQAKSHGGSNKLNVNTLHARNIFVDSD 80  
WD40-rpts                                                                                      

Query       81 FSYIDDVPRRRQDCHSDYDDCNYDSDCGGDKADDEANDIAAAPRDDGNVALILMNQRNLSEQWRQDNKGNSNSNKAATKT 160 
WD40-rpts                                                                                      

Query      161 CAVTKSPQSGNEQQQHQQQQQQQQQQRQPTQRLSNSLQQQQQQEQQLQQQQQQQHSNKENTLSYDNNNKPHCNYCKLPDT 240 
WD40-rpts                                                                                      

Query      241 AEPQTNSNSNSKIDSPKSSQNKMTITTATDTETATATTATATGECGLPAATSQEFVGAATEVLCNDKATLTAATPAATAT 320 
WD40-rpts                                                                                      

Query      321 TAATTPKPRIAARPTTPSRLKTVIKTTMVKRSPSHDSTATAAHVLLPHSCSSNSNSSSNNIGAHDEPRRSVRERIAAFAA 400 
WD40-rpts                                                                                      

Query      401 GNEQQQAARQHDKVKKLTKMQCNSNTNQNNMTAEDVKSAISNSSSSSSNQLQQQQHQTLINGQAATVPAATAAATGGVAA 480 
WD40-rpts                                                                                      

Query      481 ATSGRTSAIAADTTRYKSGLSDVAANGDVDGRPTSSATTSVVATGAPSVFSTGCATMPRTRQYGSNVAAALATGATLATS 560 
WD40-rpts                                                                                      

Query      561 ATSATSSATGATSPGSHTMTADKKFLSQAAPVQGHHHHKLQFADKADSELAALDNLDLAHSLDLLDVDGEDPYGALQDYL 640 
WD40-rpts                                                                                      

Query      641 ERVKREINEVFELRKVQRLEQQLREQLEERLSQAGVQQLDELSRSTESDSGFDSSSTTATSGTPATATAAGAGAVTSGKP 720 
WD40-rpts                                                                                      

Query      721 VTTKLRALPPPPLSPTKTTTNSMPTPPVQADDVNIWACKFLRDLDSLMAAGDKLPPHLAALAEGSGSGSASSSPTSRTAP 800 
WD40-rpts                                                                                      

Query      801 ILLSAAASAAIQSRLGKGSSSIMEHQLQQQQQQQNGLVLKPEKHATIPLQSFYLDCGRNEASPATKSNVAYMRTLSAPNG 880 
WD40-rpts                                                                                      

Query      881 GFASGGGGGAARGSGAPALPPQSQRKSLACPPLNGQADTITPTPATHKLTNFQSALKIEEMAAAKGTAMATGESQLATTI 960 
WD40-rpts                                                                                      

Query      961 EDLKSRRQRQLSGGDMETMLASQPMSMPKRVGINHAVLTSRNAITPPPASASSASQSAASVHSAKGSSSAGTTPGYLVDV 1040
WD40-rpts                                                                                      

Query     1041 TKKGSTSTIWTSEESILRSVGAVDEDNNSTSSSSACEEATGVLSSGKSGISLDSSGLDNDNNESGIGTATPPKDMSHYWK 1120
WD40-rpts       (_____________________________WD 1_____________________________)               

Query     1121 SHHLQHHHHHHHRKCTGSAQDNESVSSLEALRKMKFQKSGSVASSDDPDVLEVLSQCGSGGEANESQDDMLDEEKDKMSK 1200
WD40-rpts                                                                                      

Query     1201 SQDYDEIWDCDCTDGDASSASGGGGVTATPVILRRKYTAPPPILVPRTQRSHSLDHYHSPQPLVHPRKVLPIHHHALKSK 1280
WD40-rpts                                                                                      

Query     1281 ERGQLSLVLRQEPFQSLLSPSATAANQLHHFVELPSPSSASLHSGLGDSGGIQELCTKSNSAPMLLKEREMSRRFDNFEA 1360
WD40-rpts                                                                                      

Query     1361 QHLTLRYSRSQSDRYLAEIEAVEACKWLRAAGFPQYAQMYEDHQFPIDLNNVAKDHTNLENDQLQSLYRRLCVLNRCATM 1440
WD40-rpts                                                                                      

Query     1441 RLDQSHKPQTPQQKEESDDENFALSEHWTFQPHIRRWSRIGEMGLELPPPGLLSLNVEKTESSSKESSPDRFEEDGAGIT 1520
WD40-rpts                                                                                      

Query     1521 LVTPGCSKAGGIPNDGSSLGEGSDSGRLRRSGSERIKDQAKALLRRVESIKSRRRKRQNRENVVISGPTVLDLSQFGQRS 1600
WD40-rpts                                                                                      

Query     1601 SLRKPDAVYSTPPSPSALSPMHTFPKAPFFGNDLKVPSHSDNFLSPNRSSPKRTPTTPRSMRTSPLHFFSSPMSQLKEGK 1680
WD40-rpts                                                                                      

Query     1681 SDDSSSYYSDSQESSTGGKLSLRKPSKARRFLQRTGKVDDIGAHSDSECHQGRKLLIKDANSNTTEVKVKKLTRGGSLNL 1760
WD40-rpts                                                                                      

Query     1761 GKDPKKRDGFRSSSFRSRSTSRKEAKNDEDTAGATTNGGSKRQPVVRWHSFQMEERPNMIFRKCFSKKIEPLQEDAGGMP 1840
WD40-rpts                                                                                      

Query     1841 FAAMSAGQLQIIRKLALVTLTGHMERYCPSHRSGWNWELPKFIKKIKMPDYKDKKVFGVPLLMILQRSGQTLPLAVRAAF 1920
WD40-rpts                                                                                      

Query     1921 RWLQLNALDQVGIFRKSGGKSRIMKLREQIEVTDSTAECMDVFDLQQAYDVADMLKQYFRELPESLLTTKMSETFVAIFQ 2000
WD40-rpts                                                                                      

Query     2001 HLPAEVRLDAVQCAVLLLPDENREILYVLLEFLTIVAANSQQNQMTSNNLGVCLAQSIFHSSISTGSASVSASPRRKGKG 2080
WD40-rpts                                                                                      

Query     2081 SGMPDMKELAEAKASHECLSFMIEHYKQIYTAAKEKLSKCNFSYMEESKPLPLEALGEGMQFHNWRGYLYECTSATIKEG 2160
WD40-rpts                                                                                      

Query     2161 REKTRGWFSINSLNDSSVDIAYKKVGDGHPLRLWRCSTEIEGPPKEVLEFVIKQRASWDTNLLQCQTVKKLDDRTEIYQY 2240
WD40-rpts                                                                                      

Query     2241 ALDGQLTTDFCVLRSWQTDLPRGACVIVETSIDHAKAKPLFGAVRGVVLASRYLIEPCGSGRSRVMHLARVDVKGKTPEW 2320
WD40-rpts                                                                                      

Query     2321 YNKNYGHICSHYLSRIRLAFKHVADGPESKV 2351
WD40-rpts                                     

1 WD40-repeats found in QUERY=FBpp0111544 (Len=2351):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9  1042-1105     3.04  240.28  0.03540       20.0%     -7.44

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1042-1105   KKGSTSTIWTSEESILRSVGAVDEDNNSTSSSSACEEATGVLSSGKSGISLDSSGLDNDNNESG

   WD40 Template    TGECLRTLSGH---------------TSGVTS---------VSFSPDGKRLVSGSEDGTIKVWD