WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0111415 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0111415 (Len=3671) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0111415, Len=3671): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MHSTSTVVRSVDLNSSMELEEEAEDPGTADTEEEEGEPVGEEEEEELVEEEVDSDLTASTINRETMGAASAAAASASALG 80
WD40-rpts
Query 81 SGLASAHRPQLRSQESQSLTATPVHYSSTNYSMSKQCMLNNANANSTETETDNIIYTDINDMGHYKYPDFHSSAHQEHKI 160
WD40-rpts
Query 161 SNSEHLNLNERNDIYATVNRKAKSKIREKHFSDEFIDQSILQYTRAKQMGLSQVPVLLQQPSTSAYAAALQERSYNSGSY 240
WD40-rpts
Query 241 QYHNDLNHPSESSSSSYFGTGFGTKRYGQSERTKLAQSENYLTPSLDSQSSRHTHSLPRNSELSGVDSVDSYDSHYITHH 320
WD40-rpts
Query 321 SVGILPPGHLSSSSEKLDFQLPSGNLYSTTQFVKPEDASAHYMEDEEEEEEDEGENIYDQVERDSWLKSSSCKDLFERYS 400
WD40-rpts
Query 401 STYYDREHSKPMTAFDKEFLSSNRIDSPVTRYDDSRHSLYVAKNHSIDAHQGFSPLPQSKVYSSSYPGSTYNTQEHKRQH 480
WD40-rpts
Query 481 GHHMDYSGSQDDISQDSYELLEKYDIDFFGGRGRSEDHMRSCSLDSGNYIPSDDESVSEGHQQHKYRSEMDVKSKSAADI 560
WD40-rpts
Query 561 MNEIWDAEDPRYLPREKLSVKSDGNFYKKIQEALVRTSSLESQSEMFETKISRSSDSSKKSRDSLYHTDSKKSRETTKSK 640
WD40-rpts
Query 641 TSVASSQDSKESLVGDCFGRNYEMPTTTGKKVKQFTKKELYEKFAQSSQESKSDYYDAVETGLEHTPEGLYSRPKVKSHD 720
WD40-rpts
Query 721 CLLSDTHSSTANSSFYDSRDTYSTFPSNKTHKTSKVHSISLQNVEIERNAKSFGSKSPESVSTPASGKRCREKDIQTGDS 800
WD40-rpts
Query 801 LDQMAPIKRGNSQSCKISAFRRRSDSENIFSFDQDRIECIQKYTKQWEGQQPKDEKSKQSPEYPLTPELVSEFEKQQARL 880
WD40-rpts
Query 881 MAHQKITRKEELIAKTHFEEYNPIMVPLNYSSHATVERTKSDPNSLANRARLGSNSRRHVLMHQKSIDLTPADSNSSDED 960
WD40-rpts
Query 961 YIYKQIPSAPPLCKAHGNFEIPKCYDGSAASQIAQELPKTGFELPKSFFRDYERRFTKVLKEDIPYVLHKRHIMNGTAPS 1040
WD40-rpts
Query 1041 PSEKKHTKPKSPKSPKSPKSPKSPKSPKSPKASSGGLGPGSTDFLPDILDSLLPSDTKEFLFTQNIDLSKVDPITLEIDK 1120
WD40-rpts
Query 1121 TIPTIHLSSPKRDITKQMDASTLEKLNKKLSQIESDSATSSRTESMQQQKLEQKQMELIQSLRKELQANARKANKPRVIP 1200
WD40-rpts
Query 1201 KTKSAGKSKKGKTRITSFSSDDESLDSDDVFGSAEAIPDRLEFSPPQSRKEIESILRIEQSRLISAAWGRGQTMSSTEIE 1280
WD40-rpts
Query 1281 GSPPQCRRLADLESRYHTQKLDPQYANATELRRISERSISIPSSEDEPHMPMRGRIDECTNDYQRNENIPSPILEHAEFF 1360
WD40-rpts
Query 1361 RSNDDIYETCHEERITGSDIDYTLKKQTSSGSKSKVKLIEEIIDSSIVMRSKGHAPILFAHARLNLSEGSVSLQRQKATQ 1440
WD40-rpts (__________________________WD 1______
Query 1441 QQSPTTERRTKSLDTPVISLHRLPPMNAFSSKDDTVGFEEEAEILEEKSLERENQATAQDEDTADSIHSCAGSIPTQSSY 1520
WD40-rpts ____________________)
Query 1521 QTNGRDSLLSAVSIDTEEAELLNQLRYIEKIALQGVKIKDKKKSKMKLRSGDHLILNIPKYRFTDWSPYSSANSSRKTSP 1600
WD40-rpts
Query 1601 GVSRASSIESTGKGKLKTSEPYKGKPVSRSRPESRRTSADDIKARDGRGSKKSSPKERPRSIEMRRLSKDKSKSQEETEA 1680
WD40-rpts
Query 1681 DIAKRKERQQKLYESAMKQTITMLSPVKDTLPAFPAPGDKILVKTDGDKIIIETEFKSKAEDHVLIAKSPRKLDNSLVKF 1760
WD40-rpts
Query 1761 SRSFDEGRSPDKLDKANRSFEDRNKSFEDSEKSDAPEDMLIKSPKKIAKAQELKQKIEGSVVHKKIDGKSSSLERPAEHH 1840
WD40-rpts
Query 1841 YLGPDVKARSLDDKRQATEAAKKNEEKPAPVVRSAIGDRRMFAHQYQVQEPHQEDIDMQAVISERRSLEILKRSLPSEDA 1920
WD40-rpts
Query 1921 RDSEGAFSRKPSTAESLDSYVSVDESHSAASKSPVPGTGGGTEGYPHRVPTIECEEPSIEEDENSSERRHLKVGGQDTNR 2000
WD40-rpts
Query 2001 LSLDRSRSDETGSWMTVECDEFIGSDTSDNEPRTLEPDRNVLETQATLEDANPLEYSNCATPTSDLNILLTPPNASPQIE 2080
WD40-rpts
Query 2081 KSVLETFEKYTGSSDTGKKKNTLDKQSDRSKSSDSWTSGEKDTSPQRQQDWSLSVGKEKSSVEEESSVSCSIARPLGISQ 2160
WD40-rpts
Query 2161 DFGKEEARKCQELKQRMLQLEVGKEEITPTPSNEQTPTNEPKILVSKKPSTPTLEKQSPIDLGTSTESYLEPIEERIAKI 2240
WD40-rpts
Query 2241 LDRGGARTEDSESSSGGSRKPPRIEKPARANAGKKLSVTRADAGKSGSDRSSQESKSSFDSKGSLSVESRGSFETESSSG 2320
WD40-rpts
Query 2321 SLGAAQRRGELAQKEQQSTWRPFPIESSNSSSTDDPWHHVETDGGYERYDAQNPLRDSSDSDVKEASPDDQKDASDASYQ 2400
WD40-rpts
Query 2401 DELNDFPATFGYPAMTSSLGGIGVNPTDIIGYSTGFTLGRTLSRISERSTASEKSSMEDDVSKASTHSVSMRDESVGSTD 2480
WD40-rpts
Query 2481 HQPSLSSDSRSNTNLAYISDADRRTSAEMPEIPCDSATGDRLSSFGSLNEPKSPTLVTGRFSVTHVDEQQGDDVERHTLM 2560
WD40-rpts
Query 2561 CLSNAGSQDSEDWPLPEIPFDHVPVKPADSLYAMPDLDKPVPKSFCWKASLSFQQSQDSLDWPSPPSSAIGAPIIVENIE 2640
WD40-rpts
Query 2641 TYYASEVQSADKVILDEEMAVGPPDVAKVLPYEDTAYLMSAAFDDNDFGNEQLQPDTVSCLSSTLSAASCLSSSLNVSCT 2720
WD40-rpts
Query 2721 TSSTQATARALRKNSSPEVIVAQPTRSPAPRSPLSEDELFSSDDVFMPGTIKVQLSPDAQLRKLSKGSNNSDTSIDDILS 2800
WD40-rpts
Query 2801 GSTTYLEDQTTVRKNYEARLSSGGGGASCKKCSHSSHSEEETSSLGTDLDGTVRMGGLQQKKCTHSSHSEDTSIGLSISE 2880
WD40-rpts
Query 2881 WSTGTNTVRQYANLSGSDSLSAVSTHSCAKSEKSNQTKSSISSINKSAESLNEQSGGSSFSHKFSGDNGSSDGLRYDMLS 2960
WD40-rpts
Query 2961 NSETDKLSEATSATRSDDTTLTLTEMAHTISEWSTSSSRTLVGVAPGEYLPLKQALSGNKTSLSSPSEEKRCALPQVHRR 3040
WD40-rpts
Query 3041 SGSNGNQARAAQEHADSQTGPETSAAARKRRSLEMMSKLYQSQEICSESESPFVERLYAHSEKLTERYQSQEFVPLHGGP 3120
WD40-rpts
Query 3121 PASHLASSTTSQIQTQQPQQVRQKPRAPQPPTKPKPAVTRPIMQALLNKMKQPGLAEQAAEAAEAEEKKAMIAASAVAAK 3200
WD40-rpts
Query 3201 PPPPPVPTVPPIVTPSDLPGDAVAPPPKPLAKHHSYDDRTLSKTQIREFKTTSKQLRQSSSFHEHMLSKSQQSSQELPMR 3280
WD40-rpts
Query 3281 IDEERDPHSTSSATNTTTTTNTLNSESTEPNSPQMPQRADKLVRCSPYYSSSLSSESPPNQLLQKPPRKTATQLSAGAVA 3360
WD40-rpts
Query 3361 ASLKSPPSGNDTDSSLDVRGQEAKMRSRGYRKKRQLPVKRMRANLTAAALLEQAESSECSEGYVPEVDSGSSEYSSCQRD 3440
WD40-rpts
Query 3441 DQYLEFDEELERDQTDDYEDYPQYSGKFESLDMSDNVDEMGFPRYDRLSHITKPMYHQALVMERPNPVQLPAPANHPMPP 3520
WD40-rpts
Query 3521 ATGQPVKPARTKKRQFKREDSTAAGTSGHSTAAPQVRPYHGRSYCNPEESEYETRGGGLSDELANSSEDSCSGFGGDAGA 3600
WD40-rpts
Query 3601 SGSGTIRRGTTKGAGQDQEQGTGGQARHVPYPDFLSDYESEPIEYERYACGLDIRVDPPPKFHDSDELSDQ 3671
WD40-rpts
 1 WD40-repeats found in QUERY=FBpp0111415 (Len=3671): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 14 1404-1461 2.84 231.92 0.04565 12.5% 24.91Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1404-1461 DSSIVMRSKGHAPILFAHARLNLSEGSVSLQRQKATQQQSPTTERRTKSLDTPVISLH WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLV-------------SG-----SEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |