Input parameters:

  Query = FBpp0110116 (Len=412)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0110116, Len=412):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTIVLNLPVCVLFLLGTLVPSNSQKWIPYANPLDEQSQLQEDILDNTKLTTVDLIEKYGYPSETNYVTSEDGYRLCLHRI 80  
WD40-rpts                                                                                      

Query       81 PRPGAEPVLLVHGLMASSASWVELGPKDGLAYILYRKGYDVWMLNTRGNIYSRENLNRRLKPNKYWDFSFHEIGKFDVPA 160 
WD40-rpts                                                                                      

Query      161 AIDHILIHTHKPKIQYIGHSQGSTVFFVMCSERPNYAHKVNLMQALSPTVYLQENRSPVLKFLGMFKGKYSMLLNLLGGY 240 
WD40-rpts              (____________________________________________________WD 1_______________

Query      241 EISAKTKLIQQFRQHICSGSELGSSICAIFDFVLCGFDWKSFNTTLTPIVAAHASQGASAKQIYHYAQLQGDLNFQRFDH 320 
WD40-rpts      _____________________________________)                                          

Query      321 GAVLNRVRYESSEPPAYNLSQTTSKVVLHHGEGDWLGSTSDVIRLQERLPNLVESRKVNFEGFSHFDFTLSKDVRPLLYS 400 
WD40-rpts                                                                                      

Query      401 HVLRHLSTSLSG 412 
WD40-rpts                  

1 WD40-repeats found in QUERY=FBpp0110116 (Len=412):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   169-278      2.84  232.10  0.04540       17.5%     12.51

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  169-278    THKPKIQYIGHSQGSTVFFVMCSERPNYAHKVNLMQALSPTVYLQENRSPVLKFLGMFKGKYSMLLNLLGGYEISAKTKLIQQFRQHICSGSELGSSICAIFDFVLCGFD

   WD40 Template    TGECLRTLSGHT--------------------------SGVTSVSFSPD--------------------GKRLVSGS------------EDGTIK------------VWD