Input parameters:

  Query = FBpp0099939 (Len=882)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0099939, Len=882):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQQSRKFEGKIPKLSQTSAATGGATAAAEASTSKSSQGQQQQIVYVNMLPAANTLNGIPQQQQQQQYASTDGNVYQLQNE 80  
WD40-rpts                                                                                      

Query       81 ILCDANGHAVTAATASYQTTASSPQQQQQQQQQQQNVATSVADNVVTTISSSSILHTNANTNGVDTLAATQQQQQQQQQQ 160 
WD40-rpts                                                                                      

Query      161 QQQQQQQHYHYITTTGEDGQTPTTIVFENYNGGMPAVSSAAPTPVPVSQANAPATTTTTALVNTDGTIIEFDGSTYEEYH 240 
WD40-rpts                                                                                      

Query      241 VLKSEPGSSDCLSNGSSAVAADIIKYDPQHGVVGDEEDDDENGMLHVKYEEQSLEHDPENEHDAEQEHEYEEYQVIKAEV 320 
WD40-rpts                                                                                      

Query      321 EAEAAELAAGTTSYTISQEQTGSGNTVLSSMVPKSGSAAAAKQKRKRKTRVIADDEQGEYLEKMSVRGLDIARYEHIIDG 400 
WD40-rpts              (_________________________________WD 1________________________________) 

Query      401 VAYCLVCAKNDIFKTFKNKYSFQRHAYLFHEGQNRKIFACPICNKEFSRPDKMKMHKKDKHGDVPMPPSATTTPLKADGP 480 
WD40-rpts                                                                                      

Query      481 PAKRARTARTPRVRKTKDGSTPTKKRLAQIDSVLDDVQNGESLTMAPVSVSHSQQQQQQQIQHSITTLAPSTPSQPQHQL 560 
WD40-rpts                                                                                      

Query      561 QTLPSLDFSGMILPGGAQLALANPGATSSVGLQRGPATPNGQPAPPTTTLIYSNQLELQQALLQQQLQGQSIMIQDQAGN 640 
WD40-rpts                                                                                      

Query      641 LVPLQLDGTQAIYTTAPQAQRQQTTATYQTTQQQQQQPAQQPAGQAQQQPHYELDNVTYLSSTAAATPTSAEQQQQQQQQ 720 
WD40-rpts                                                                                      

Query      721 QHVIGTVQSYQILTPDGLQNFQPKLETAELGDLCPYSQYTFTTHAGAQPTLNANALDAQTQHQQHHQQQQHHHQQQQHHQ 800 
WD40-rpts                                                                                      

Query      801 QTQLLQQQPFATHHNPHQQFMELKNELLIKGGDAYTLDTASMYHLPFSPTSMINAVNDVNTSSLLETKEISYDISEAVLL 880 
WD40-rpts                                                                                      

Query      881 AL 882 
WD40-rpts        

1 WD40-repeats found in QUERY=FBpp0099939 (Len=882):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   329-399      2.93  235.55  0.04088       20.0%      3.79

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  329-399    AGTTSYTISQEQTGSGNTVLSSMVPKSGSAAAAKQKRKRKTRVIADDEQGEYLEKMSVRGLDIARYEHIID

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVS--------------GSED-----------GTIKVW------D