Input parameters:

  Query = FBpp0099839 (Len=410)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0099839, Len=410):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMSSRMSLKDLTIECLLLIFDYCSEGDLLCLCRADPALEYIIEAYYFYPLAYDLLLCGHRNNPRIEQRNRRRLKNYERIE 80  
WD40-rpts                                                                                      

Query       81 LSRNWVSGTYFERPYFHHAQMFPTKLCLEADFLYITHACYLRKYRRSSCDALHRRFDEEICTSAQTDISDFVKKNETIFA 160 
WD40-rpts               (_________________WD 1________________)(___________________WD 2________

Query      161 GRVCGSCFHYDTDSMVMTEQRMHPANEYLYCVDFVKDLYATSTDHCCRLWQRAQEFGMTHFDQVMHLPHAFRSLELSSDG 240 
WD40-rpts      __________)(_________________WD 3_________________)(______________________WD 4__

Query      241 QWLYGGLYTDNGRQALRAVHVESGEELVFSSKTMSIYDLKLKDDQVIFTANFDSTFRMFDRRVDRDVAIWDDPFDSSFYS 320 
WD40-rpts      ___________________)(_________________WD 5_________________)(___________________

Query      321 LEYDGLHAVLVGTNRHARVNLYDIRMKKYVQLYFPGRTRSHNGLSPVYSLACDSQYMFVATDHNMRVFDFKASCGIRRDY 400 
WD40-rpts      WD 6__________________)          (_______________WD 7_______________)           

Query      401 SNIVYKRSET 410 
WD40-rpts                

7 WD40-repeats found in QUERY=FBpp0099839 (Len=410):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    90-128      4.02  280.77  0.01020        5.0%     22.85
  WD 2:  Seg  5   129-171      4.80  313.13  0.00375       12.5%     42.61
  WD 3:  Seg  9   172-211      5.54  343.69  0.00145       20.0%     49.40
  WD 4:  Seg 13   212-260      5.38  337.02  0.00179       15.0%     50.13
  WD 5:  Seg 17   261-300      6.30  374.91  0.00055       15.0%     51.58
  WD 6:  Seg 21   301-343      6.14  368.15  0.00068       12.5%     47.30
  WD 7:  Seg 26   354-389      4.38  295.45  0.00648       15.0%     40.36

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   90-128    -Y---F-----ERP-----YFHHAQMFPTKLCLEADFLYITHA----CYLRKYRRSS
   WD 2  129-171    CD---A-----LHRRFDEEICTSAQTDISD--FVKKNETIFAG----RVCGSCFHYD
   WD 3  172-211    TD---S--MVMTEQ-----RMHPANEYLYCVDFVKD---LYAT----STDHCCRLWQ
   WD 4  212-260    RA---QEFGMTHFD-----QVMHLPHAFRSLELSSDGQWLYGGLYTDNGRQALRAVH
   WD 5  261-300    VE---S-----GEE----LVFSSKTMSIYDLKLK-DDQVIFTA----NFDSTFRMFD
   WD 6  301-343    RRVDRD-----VAI-----WDDPFDSSFYSLEYDGLHAVLVGT----NRHARVNLYD
   WD 7  354-389    FP---G------RT-----RSHNGLSPVYSLACDSQY---MFV----ATDHNMRVFD

   WD40 Template    TG---E-----CLR-----TLSGHTSGVTSVSFSPDGKRLVSG----SEDGTIKVWD