Input parameters:

  Query = FBpp0099554 (Len=827)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0099554, Len=827):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQQTQWNKDRQEDRNNNSGSRSEQDSGCHRRLFLCIAKAVKQFIDLCNNLGANCSTTTATSPSTSSSSASSTQNLIAVVP 80  
WD40-rpts                                                                                      

Query       81 PQLQQLQVQLPAPGGGGGAGAGGGGGGGGGAAPVRRHISHTTAVKFLYARKFDIPRAVSLYEQHEQIRLKEYLYNIDPDV 160 
WD40-rpts                                                                                      

Query      161 EPLRSELQTGKFTILPARTSSGAAIALFTANRHSPLSVSHTTTLQGIVYQLDSALQDSETQRAGLVFIYDMSGSKYSNFD 240 
WD40-rpts              (____________________________WD 1____________________________)          

Query      241 YDLSQKILTLLKGGYPARLKKVLIVTAPLWFKAPFKILRLFVREKLRERVFTVSVPQLALHVPRKALPIHLGGTLEVDHA 320 
WD40-rpts                                                                                      

Query      321 TWLLSCRQSMTNREDELLANIVGVGGGSGSGSAAGSAAIVSTNGTETEAATTAATIISAVHQLGDNNTTVVTVSNGVGPA 400 
WD40-rpts                                                                                      

Query      401 GSASGGATTAASAATEPNENITINGLSPSHRQAANNSSSSSSSAATVANPLKLNTSGSADNNSTITNATTAAGAAGAAAG 480 
WD40-rpts                                                                                      

Query      481 TTTNGGGEFWSENPPSSASSGFSDDDSLAGQEGDPKPIDQIVQMVKQRGRHGLIKEYADIRNRAPEGTFLHARMRANLTK 560 
WD40-rpts                                                                                      

Query      561 NRYTDVLCYDHSRVVLAHEDGDEPSDYINANFVDGYKQKNAYISTQGPLPKTSQDFWRMIWEQHCLVIVMTTRVMERGRV 640 
WD40-rpts                                                                                      

Query      641 KCGQYWEPTEESSLEFGDYHVRTISVECNEDYMVASLELRNIKTDEIRNVSHWQFTSWPDYGVPSSAMAMLNFLQKVREK 720 
WD40-rpts                                                                                      

Query      721 QAQLVQGLGDTWAGHPRGPPIVVHCSAGIGRTGTFITLDICISRLEDVGTADIRGTVEKIRSQRAYSIQMPDQYVFCHLA 800 
WD40-rpts                                                                                      

Query      801 LIEYAYSRGMLQTVDLAGFDEREPDSE 827 
WD40-rpts                                 

1 WD40-repeats found in QUERY=FBpp0099554 (Len=827):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   169-230      4.02  280.58  0.01026       25.0%     26.82

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  169-230    TGKFTILPARTSSGAAIALFTANRHSPLSVSHTTTLQGIVYQLDSALQDSETQRAGLVFIYD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSE----------------D------GTIKVWD