Input parameters:

  Query = FBpp0090943 (Len=484)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0090943, Len=484):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSSFFLKPGAKGTKKRKNPAATTKGKPLKKGGKPGKSTPAAGGPVPKKQRRPKEEDEEIASDDEEYNSDLGGDDNTLAF 80  
WD40-rpts                                                                                      

Query       81 SSDEGEEETPQDKRLRLAKQYLSEIEKQEAERAEDRELAQSVEQRLQTEYLDSVGKLRRNIAGSLKACESSRILKHKLHH 160 
WD40-rpts              (_______________________WD 1______________________)          (__________

Query      161 TPICALALSPDGKFLYTGAKSQFLLKWCTETGKVLEKSDVLSHREEPETGKKRRSHVISICLSSDMKYLALAEGGPHIQI 240 
WD40-rpts      _______WD 2________________)               (_________________WD 3_______________

Query      241 WCPQTMKHIKTLKGHRDSVAGLVFRKGTHDLYSAAKDRSVKIWSLDEMAYVESLFGHQTAVTSIDALSRERAITAGGSDC 320 
WD40-rpts      _)   (_________________WD 4________________)   (_________________WD 5___________

Query      321 SLRIWKITEESQLIYNGHKDSIECVKYINDEHFVSGGMDGAIGLWSALKKKPICTTQLAHGVGENGVANWITAIAVVVNT 400 
WD40-rpts      _____)  (________________WD 6________________)           (_________________WD 7_

Query      401 DLVATGSCDGCVRLWQTNPNARKMNLIQSISIAGFINGLAFNADGSKLFVATGQEHRLGRWWRLKEAKNQVVVLDVKLQS 480 
WD40-rpts      _______________)   (___________________WD 8___________________)                 

Query      481 AASS 484 
WD40-rpts          

8 WD40-repeats found in QUERY=FBpp0090943 (Len=484):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    89-139      4.85  314.95  0.00354       17.5%     19.83
  WD 2:  Seg  6   150-188      8.45  463.70  3.5e-05       22.5%     55.76
  WD 3:  Seg 11   204-242      8.36  460.12  3.9e-05       27.5%     43.50
  WD 4:  Seg 14   246-284      9.62  511.85  7.9e-06       27.5%     55.47
  WD 5:  Seg 18   288-326      9.41  503.21  1.0e-05       22.5%     52.27
  WD 6:  Seg 22   329-366      7.69  432.42  9.2e-05       30.0%     52.27
  WD 7:  Seg 27   378-416      8.21  453.86  4.8e-05       17.5%     43.34
  WD 8:  Seg 30   420-463      5.96  360.89  0.00085       22.5%     48.98

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   89-139    TPQDKRLRLAKQY---LSEIEKQEAERAEDRELAQSVEQ-RL--QTEYLDSVGKLRR
   WD 2  150-188    -SSRILKHKLHHT---P------------ICALALSPDGKFL--YTGAKSQFLLKWC
   WD 3  204-242    -REEPETGKKRRS---H------------VISICLSSDMKYL--ALAEGGPHIQIWC
   WD 4  246-284    -MKHIKTLKGHRD---S------------VAGLVFRKGTHDL--YSAAKDRSVKIWS
   WD 5  288-326    -MAYVESLFGHQT---A------------VTSIDALSRERAI--TAGGSDCSLRIWK
   WD 6  329-366    -EESQLIYNGHKD---S------------IECVKYINDE-HF--VSGGMDGAIGLWS
   WD 7  378-416    LAHGV-GENGVAN---W------------ITAIAVVVNTDLV--ATGSCDGCVRLWQ
   WD 8  420-463    -NARKMNLIQSISIAGF------------INGLAFNADGSKLFVATGQEHRLGRWWR

   WD40 Template    TGECLRTLSGHTS---G------------VTSVSFSPDGKRL--VSGSEDGTIKVWD