Input parameters:

  Query = FBpp0089115 (Len=730)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0089115, Len=730):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPSPVRHPAAGGPPPQGPIKFTIADTLERIKEEFNFLQAQYHSIKLECEKLSNEKTEMQRHYVMYYEMSYGLNVEMHKQ 80  
WD40-rpts                                                                                      

Query       81 TEIAKRLNTLINQLLPFLQADHQQQVLQAVERAKQVTMQELNLIIGHQQQHGIQQLLQQIHAQQVPGGPPQPMGALNPFG 160 
WD40-rpts                                                                                      

Query      161 ALGATMGLPHGPQGLLNKPPEHHRPDIKPTGLEGPAAAEERLRNSVSPADREKYRTRSPLDIENDSKRRKDEKLQEDEGE 240 
WD40-rpts                                                                                      

Query      241 KSDQDLVVDVANEMESHSPRPNGEHVSMEVRDRESLNGERLEKPSSSGIKQERPPSRSGSSSSRSTPSLKTKDMEKPGTP 320 
WD40-rpts      (_________________WD 1________________)                                         

Query      321 GAKARTPTPNAAAPAPGVNPKQMMPQGPPPAGYPGAPYQRPADPYQRPPSDPAYGRPPPMPYDPHAHVRTNGIPHPSALT 400 
WD40-rpts                                                                            (_________

Query      401 GGKPAYSFHMNGEGSLQPVPFPPDALVGVGIPRHARQINTLSHGEVVCAVTISNPTKYVYTGGKGCVKVWDISQPGNKNP 480 
WD40-rpts      _________WD 2_________________)   (________________WD 3_______________)(________

Query      481 VSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSAAPACYALAISPDSKVCFSCCSDGNIAV 560 
WD40-rpts      _____________WD 4____________________)     (_________________WD 5_______________

Query      561 WDLHNEILVRQFQGHTDGASCIDISPDGSRLWTGGLDNTVRSWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSH 640 
WD40-rpts      _)   (_________________WD 6________________)(__________________WD 7_____________

Query      641 VEVLHASKPDKYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKETSSVLSCDISTDDKYIVTGSGD 720 
WD40-rpts      ____)(__________________WD 8_________________)(__________________WD 9___________

Query      721 KKATVYEVIY 730 
WD40-rpts      ______)   

9 WD40-repeats found in QUERY=FBpp0089115 (Len=730):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   241-279      4.89  316.57  0.00337       12.5%     -9.18
  WD 2:  Seg  3   391-431      3.03  239.79  0.03593       15.0%     24.49
  WD 3:  Seg  6   435-471      6.25  372.77  0.00059       32.5%     48.67
  WD 4:  Seg 10   472-518      7.73  434.03  8.8e-05       25.0%     48.29
  WD 5:  Seg 13   524-562      8.75  475.96  2.4e-05       30.0%     55.08
  WD 6:  Seg 17   566-604     10.28  539.37  3.3e-06       40.0%     52.95
  WD 7:  Seg 21   605-645      7.06  406.36  0.00021       22.5%     52.20
  WD 8:  Seg 25   646-686      8.48  465.00  3.4e-05       30.0%     54.63
  WD 9:  Seg 29   687-727      7.92  441.92  6.9e-05       35.0%     53.94

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  241-279    -KS-------DQDLVV-DVANEMESHSPRPNGE-HVSMEVRDRESLNGE
   WD 2  391-431    NGI-------PHPSAL-TGGKPAYSFHMNGEGSLQPVPFPPDALVGVGI
   WD 3  435-471    -AR-------QINTL--SHGEVVCAVTISNPTK-YVYTGG-KGCVKVWD
   WD 4  472-518    ISQPGNKNPVSQLDCL-QRDNYIRSVKLLPDGR-TLIVGGEASNLSIWD
   WD 5  524-562    -PR-------IKAELT-SAAPACYALAISPDSK-VCFSCCSDGNIAVWD
   WD 6  566-604    -EI-------LVRQFQ-GHTDGASCIDISPDGS-RLWTGGLDNTVRSWD
   WD 7  605-645    LRE-------GRQLQQHDFSSQIFSLGYCPTGD-WLAVGMENSHVEVLH
   WD 8  646-686    ASK------PDKYQLH-LHESCVLSLRFAACGK-WFVSTGKDNLLNAWR
   WD 9  687-727    TPY------GASIFQS-KETSSVLSCDISTDDK-YIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTLS-GHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD