Input parameters:

  Query = FBpp0089016 (Len=543)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0089016, Len=543):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGLVLIKFLRSTYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNG 80  
WD40-rpts                                                                                      

Query       81 FTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTD 160 
WD40-rpts                                                                                      

Query      161 YIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPE 240 
WD40-rpts                                 (___________________WD 1___________________)     (___

Query      241 DVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGK 320 
WD40-rpts      ______________WD 2________________)           (_________________WD 3____________

Query      321 LCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSVVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHY 400 
WD40-rpts      ____)(______________________WD 4_____________________)     (____________________

Query      401 NQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIV 480 
WD40-rpts      WD 5___________________)   (_________________WD 6_________________)(____________

Query      481 VAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 543 
WD40-rpts      ________WD 7___________________)                               

7 WD40-repeats found in QUERY=FBpp0089016 (Len=543):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   188-231      3.31  251.38  0.02521       27.5%     42.76
  WD 2:  Seg  7   237-275      4.57  303.31  0.00508       12.5%     51.51
  WD 3:  Seg 12   287-325      5.50  341.97  0.00153       22.5%     46.61
  WD 4:  Seg 15   326-374      3.65  265.46  0.01636       25.0%     48.74
  WD 5:  Seg 19   380-424      5.32  334.30  0.00194       25.0%     40.80
  WD 6:  Seg 22   428-467      5.07  324.25  0.00265       20.0%     51.96
  WD 7:  Seg 26   468-512      5.39  337.15  0.00178       22.5%     58.36

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  188-231    -------------------ERWSKNRCITSMDW--ST-H------FPEL-VVGSYHNNEESPNEPDGVVMVWN
   WD 2  237-275    -ST-----P--------EDVFHCQSAVMSTCFA--KF-N------PNLI-LGGT----------YSGQIVLWD
   WD 3  287-325    TP----------------LSAAAHTHPVYCLQMVGTQ-N------AHNV-ISIS----------SDGKLCSWS
   WD 4  326-374    LDM-----LSQPQDTLELQQRQSKAIAITSMAF--PANE------INSV-VMGS----------EDGYVYSAS
   WD 5  380-424    -SG-----V--------NEVYERHLGPITGIST--HY-NQLSPDFGHLF-LTSS----------IDWTIKLWS
   WD 6  428-467    -TK-----P--------LYSFEDNSDYVMDVAW--SP-V------HPALFAAVD----------GSGRLDLWN
   WD 7  468-512    LNQDTEVPT--------ASIVVAGAPALNRVSW--TP-S------GLHV-CIGD----------EAGKLYVYD

   WD40 Template    TGE-----C--------LRTLSGHTSGVTSVSF--SP-D------GKRL-VSGS----------EDGTIKVWD