Input parameters:

  Query = FBpp0088628 (Len=589)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088628, Len=589):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTSPKPVKKVPIHLQSAQNRVYIKNGEIVNHDKSFKADVYIEDGIIKFVGPSSEITIPGGVRTIDASGLMIIPGGIDPH 80  
WD40-rpts                                                                                      

Query       81 THMQLPFGGAVAVDDFYHGTKAAVAGGTTMIIDFVLPNKHESMIEAYDKWRSWADPKVCCDYGLHVGITWWSKSVSEEIG 160 
WD40-rpts                                                                                      

Query      161 ILCKELGVNSFKTFMAYKGLYQLNDSDLLDVFERIRHLNGVAMVHAENGDIIAKNTQRLLAEGINGPEGHELSRPEEVEA 240 
WD40-rpts                                                                                      

Query      241 EAVHRACVLAHQMKTPLFVSGLTSKSSAELVGRARRSGYCVFGETLASSLGRSMSAVPKGDRIYAITSPPIRESAETPRQ 320 
WD40-rpts                                                                                      

Query      321 LMKSLAYDDLQLTGSDNCTFNKEHKALGKGDFTKIPNGVNGVEDRMSLVWEKGVHAGLLDPCRFVAVTSTNAAKIFNIYP 400 
WD40-rpts            (___________________________________________WD 1__________________________

Query      401 QKGRIAVGSDADIVIWNPNATRTISKDTHHHACDFNIFEGMTVHGVCEFVLVRGRICAERGNVRVAEGFGRFIPTPVRPP 480 
WD40-rpts      ________________)                                                               

Query      481 FVYDIIEGKVQSQPEEQHEEKQNGSMAKRFAELDIQIPVQEPISAMLAGNLAMPAEGSLCSTPSVRGRVDGKRDLQESSF 560 
WD40-rpts                                                                                      

Query      561 SISEELDRSGVRACIKVKNPPGGKSSGFW 589 
WD40-rpts                                   

1 WD40-repeats found in QUERY=FBpp0088628 (Len=589):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   327-417      4.02  280.60  0.01025       20.0%      8.14

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  327-417    YDDLQLTGSDNCTFNKEHKALGKGDFTKIPNGVNGVEDRMSLVWEKGVHAGLLDPCRFVAVTSTNAAKIFNIYPQKGRIAVGSDADIVIWN

   WD40 Template    TGECLRTLSGHTSGV--------TSVSFSPDGKR-----------------LVS--------------------------GSEDGTIKVWD