Input parameters:

  Query = FBpp0088559 (Len=517)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088559, Len=517):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGLVLIKFLRSTYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNG 80  
WD40-rpts                                                                                      

Query       81 FTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTD 160 
WD40-rpts                                                                                      

Query      161 YIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPE 240 
WD40-rpts                                                                             (________

Query      241 DVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGK 320 
WD40-rpts      ___________WD 1___________________)           (_________________WD 2____________

Query      321 LCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHY 400 
WD40-rpts      ____)                                                      (____________________

Query      401 NQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEQYIAWSPVRRQRPPGPDKTQPRHGAPALRRDSWTPSGLCIGDEAG 480 
WD40-rpts      WD 3___________________)                                                        

Query      481 KLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQGDEI 517 
WD40-rpts                                           

3 WD40-repeats found in QUERY=FBpp0088559 (Len=517):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   232-275      3.14  244.47  0.03115       27.5%     32.18
  WD 2:  Seg 13   287-325      4.20  288.35  0.00807       22.5%     47.07
  WD 3:  Seg 20   380-424      3.93  277.06  0.01144       25.0%     45.05

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  232-275    TKFKKSTPEDVFHCQSAVMSTCF--AKFN------PNLILGGTYSGQIVLWD
   WD 2  287-325    TP---LSAAAH---THPVYCLQMVGTQ-N------AHNVISISSDGKLCSWS
   WD 3  380-424    -SGVNEVYERH---LGPITGIST--HY-NQLSPDFGHLFLTSSIDWTIKLWS

   WD40 Template    TGECLRTLSGH---TSGVTSVSF--SP-D------GKRLVSGSEDGTIKVWD